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INV Genotyping tool

INV genotyping using SNP callset.

Author: Maggi Chen

Email: maggic@uab.edu

Draft date: Feb. 4, 2024

Quick Start

# INV genotyping using a tabix-indexed VCF file containing SNPs
./genotyper.py -v input.vcf.gz 

Depencency

Dependencies:

  • python3.8
  • pysam (tested with version 0.22.0)
  • pytabix (tested with version 0.1)

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