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📝 fix typos
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Kevin Cazelles committed Dec 10, 2021
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12 changes: 6 additions & 6 deletions README.md
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Expand Up @@ -54,11 +54,11 @@ You should now be ready to reproduce the analysis.
- `basic_omnivory_module.jl`: includes all basic building blocs including the basic set of ODEs (`model!()`) and the functions to compute the different metrics (e.g. `overshoot()`);
- `pulse.jl`: functions to run pulse analysis;
- `press.jl`: functions to run press analysis;
- `fig_press.jl`: script to create pulse figures (Figs. 3 (a-c), 4 (a-c), S3 (a-c), S4 (a-c));
- `fig_pulse.jl`: script to create press figures (Figs. 3 (d-f), 4 (d-f), S3 (d-f), S4 (d-f));
- `fig_press.jl`: script to create pulse figure panels (Figs. 3 (a-c), 4 (a-c), S3 (a-c), S4 (a-c));
- `fig_pulse.jl`: script to create press figure panels (Figs. 3 (d-f), 4 (d-f), S3 (d-f), S4 (d-f));
- `fig_S1.jl`: script to create figure S1;
- `fig_S2.jl`: script to create figure S2.
- `pipeline.jl`: orchestrate the different scripts to reproduce the analysis.
- `fig_S2.jl`: script to create figure S2;
- `pipeline.jl`: orchestrates the different scripts to reproduce the analysis.


## How to reproduce the analysis locally
Expand All @@ -71,7 +71,7 @@ julia src/pipeline.jl



## Questions
## Questions?

Script have been commented for ease of comprehension but if you still have some questions regarding the numerical implementation, do not hesitate to open an issue.
Scripts have been commented for ease of comprehension but if you still have some questions regarding the numerical implementation, do not hesitate to create an issue.

1 change: 1 addition & 0 deletions src/fig_S1.jl
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Expand Up @@ -3,6 +3,7 @@ include("pulse.jl")
using PyPlot
pygui(true)

# PRESS SIMULATIONS for ranges of K, aCP, eCP and mP.

# range of K
println("Simulations for a range of K values")
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2 changes: 1 addition & 1 deletion src/fig_S2.jl
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Expand Up @@ -3,7 +3,7 @@ include("press.jl")
using PyPlot
pygui(true)


# PULSE SIMULATIONS for ranges of K, aCP, eCP and mP.

# range of K
println("Simulations for a range of K values")
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4 changes: 3 additions & 1 deletion src/pipeline.jl
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@@ -1,4 +1,6 @@
# Install packagess
# Orchestrates scripts

# Install packages
printstyled("1. Installing packages\n", color = :blue)
include("install_packages.jl")

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2 changes: 1 addition & 1 deletion src/press.jl
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@@ -1,6 +1,6 @@
using DifferentialEquations, NLsolve

# analysis for one press simulation (1 system)
# Full analysis for one press simulation (1 system)
function press_unit(par, p_strength)
# Parameters
u0 = [1.0, 1.5, 1.5]
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3 changes: 1 addition & 2 deletions src/pulse.jl
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@@ -1,7 +1,6 @@
# Simulation for pulse experiment
using DifferentialEquations, NLsolve

# analysis for one pulse simulation (1 system)
# Entire analysis for one pulse simulation (1 system)
function pulse_unit(par, p_length, p_strength)
# Parameters
u0 = [1.0, 1.5, 1.5]
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