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2 changes: 1 addition & 1 deletion 01_Introduction.Rmd
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Expand Up @@ -26,7 +26,7 @@ The paragraphs above are a long-winded way of saying that I acknowledge that wha

The book's layout is currently in six broad categories:

### Data Science \@ref(DataScience)
### Data Science \@ref(datasciencedefined)

Combining chapters about the scope and definitions of data science (Chapter \@ref(datasciencedefined): This thing called "data science"), along with overviews of good research practice, from opinionated analysis design to script style (Chapter \@ref(practice): Statistical & Data Science Practice).

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13 changes: 2 additions & 11 deletions 02_data_science_defined.Rmd
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# This thing called "data science" {#datasciencedefined}

```{r echo = FALSE}
library(knitr)
opts_chunk$set(message = FALSE, warning = FALSE, cache = TRUE)
options(width = 100, dplyr.width = 100)
library(ggplot2)
theme_set(theme_light())
```



***

Expand All @@ -30,7 +21,7 @@ Hadley Wickham (2018) [Readings in Applied Data Science](https://github.com/hadl
David Robinson (2018-01-09) ["What's the difference between data science, machine learning, and artificial intelligence?"](http://varianceexplained.org/r/ds-ml-ai/)


<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">Let&#39;s try that again <a href="https://t.co/1G4wHvGvdd">pic.twitter.com/1G4wHvGvdd</a></p>&mdash; Data Science Renee (@BecomingDataSci) <a href="https://twitter.com/BecomingDataSci/status/773001808096661504?ref_src=twsrc%5Etfw">September 6, 2016</a></blockquote>
<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">Let&#39;s try that again <a href="https://t.co/1G4wHvGvdd">pic.twitter.com/1G4wHvGvdd</a></p>&mdash; Data Science Renee (/@/BecomingDataSci) <a href="https://twitter.com/BecomingDataSci/status/773001808096661504?ref_src=twsrc%5Etfw">September 6, 2016</a></blockquote>

Mango Solutions (2018-08-15) ["Demystifying Data Science Terminology"](https://www.mango-solutions.com/blog/demystifying-data-science-terminology)

Expand Down Expand Up @@ -128,7 +119,7 @@ Samantha Leonard, ["6 Must-Have Skills For Data Analysts"](https://www.northeast

### Statistics and other quantitative methods: courses and text books

<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">R advice needed - I am (thinking of) switching my undergrad &#39;metrics class from Stata to R. 2 questions: 1 - what exactly do my students (and I!) need to download to use R 2 - what introductory tutorial is most helpful for students (and me)</p>&mdash; Amanda Agan (@amandayagan) <a href="https://twitter.com/amandayagan/status/1078392069503229958?ref_src=twsrc%5Etfw">December 27, 2018</a></blockquote>
<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">R advice needed - I am (thinking of) switching my undergrad &#39;metrics class from Stata to R. 2 questions: 1 - what exactly do my students (and I!) need to download to use R 2 - what introductory tutorial is most helpful for students (and me)</p>&mdash; Amanda Agan (/@/amandayagan) <a href="https://twitter.com/amandayagan/status/1078392069503229958?ref_src=twsrc%5Etfw">December 27, 2018</a></blockquote>
<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>


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25 changes: 8 additions & 17 deletions 03_data_science_practice.Rmd
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@@ -1,15 +1,6 @@
# Statistical & Data Science Practice {#practice}


```{r echo = FALSE}
library(knitr)
opts_chunk$set(message = FALSE, warning = FALSE, cache = TRUE)
options(width = 100, dplyr.width = 100)
library(ggplot2)
theme_set(theme_light())
```



First, an excellent list of data science resources:

Expand Down Expand Up @@ -98,15 +89,15 @@ An over-arching structure of what a project could (or should?) look like can be

* Emily Robinson, [Red Flags in Data Science Interviews](http://hookedondata.org/Red-Flags-in-Data-Science-Interviews/)

<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">New blog post, co-written with <a href="https://twitter.com/skyetetra?ref_src=twsrc%5Etfw">@skyetetra</a>! 12 red flags to watch out for in data science interviews 🚩<a href="https://t.co/hM2E7I46Da">https://t.co/hM2E7I46Da</a> <a href="https://t.co/jFVA7mmjjU">pic.twitter.com/jFVA7mmjjU</a></p>&mdash; Emily Robinson (@robinson_es) <a href="https://twitter.com/robinson_es/status/1014164367292747778?ref_src=twsrc%5Etfw">July 3, 2018</a></blockquote>
<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">New blog post, co-written with <a href="https://twitter.com/skyetetra?ref_src=twsrc%5Etfw">/@/skyetetra</a>! 12 red flags to watch out for in data science interviews 🚩<a href="https://t.co/hM2E7I46Da">https://t.co/hM2E7I46Da</a> <a href="https://t.co/jFVA7mmjjU">pic.twitter.com/jFVA7mmjjU</a></p>&mdash; Emily Robinson (/@/robinson_es) <a href="https://twitter.com/robinson_es/status/1014164367292747778?ref_src=twsrc%5Etfw">July 3, 2018</a></blockquote>
<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>




## Reproducible research

<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">This is the future. Show. Your. Damn. Work. <a href="https://t.co/4GWFdXSs17">https://t.co/4GWFdXSs17</a></p>&mdash; Chris Albon (@chrisalbon) <a href="https://twitter.com/chrisalbon/status/953078784084754433?ref_src=twsrc%5Etfw">January 16, 2018</a></blockquote>
<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">This is the future. Show. Your. Damn. Work. <a href="https://t.co/4GWFdXSs17">https://t.co/4GWFdXSs17</a></p>&mdash; Chris Albon (/@/chrisalbon) <a href="https://twitter.com/chrisalbon/status/953078784084754433?ref_src=twsrc%5Etfw">January 16, 2018</a></blockquote>
<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>


Expand Down Expand Up @@ -145,7 +136,7 @@ Economics & Econometrics"](https://www.tse-fr.eu/sites/default/files/TSE/documen

### spreadsheets: the anti-reproducible research

<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">I read &quot;Data analysis without scripting&quot; as &quot;Dystopian moonscape of unrecorded user actions&quot;. I may not be Tableau&#39;s target market. <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a></p>&mdash; Gordon Shotwell (@gshotwell) <a href="https://twitter.com/gshotwell/status/577485681146097664">March 16, 2015</a></blockquote>
<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">I read &quot;Data analysis without scripting&quot; as &quot;Dystopian moonscape of unrecorded user actions&quot;. I may not be Tableau&#39;s target market. <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a></p>&mdash; Gordon Shotwell (/@/gshotwell) <a href="https://twitter.com/gshotwell/status/577485681146097664">March 16, 2015</a></blockquote>
<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script>


Expand All @@ -154,7 +145,7 @@ Economics & Econometrics"](https://www.tse-fr.eu/sites/default/files/TSE/documen

* Ignasi Bartomeus and F Rodriguez-Sanchez, _Non-reproducible workflows: a horror movie_ :

<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">That awesome video on reproducibility with <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> by <a href="https://twitter.com/ibartomeus?ref_src=twsrc%5Etfw">@ibartomeus</a> and <a href="https://twitter.com/frod_san?ref_src=twsrc%5Etfw">@frod_san</a> you can find here: <a href="https://t.co/indBflvupv">https://t.co/indBflvupv</a> <a href="https://t.co/QcdonwVTk8">https://t.co/QcdonwVTk8</a></p>&mdash; David Smith (@revodavid) <a href="https://twitter.com/revodavid/status/917779772385656832?ref_src=twsrc%5Etfw">October 10, 2017</a></blockquote>
<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">That awesome video on reproducibility with <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> by <a href="https://twitter.com/ibartomeus?ref_src=twsrc%5Etfw">/@/ibartomeus</a> and <a href="https://twitter.com/frod_san?ref_src=twsrc%5Etfw">/@/frod_san</a> you can find here: <a href="https://t.co/indBflvupv">https://t.co/indBflvupv</a> <a href="https://t.co/QcdonwVTk8">https://t.co/QcdonwVTk8</a></p>&mdash; David Smith (/@/revodavid) <a href="https://twitter.com/revodavid/status/917779772385656832?ref_src=twsrc%5Etfw">October 10, 2017</a></blockquote>

- with more at [Reproducibilidad](http://ecoinfaeet.github.io/2016/07/06/reproducibilidad/)

Expand Down Expand Up @@ -221,7 +212,7 @@ Reproducible Science Workshop, 2015
* Karl Broman and Kara Woo, ["Data organization in spreadsheets"](http://www.tandfonline.com/doi/full/10.1080/00031305.2017.1375989), _The American Statistician_, 2017-09-29.


<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">For data scientists thinking about biases in your data, don&#39;t start by reading the computer science literature. Read epidemiology instead. You need data street smarts, not mathy book smarts. Otherwise the first data set you meet is going to beat you up and take your lunch money!</p>&mdash; Kareem ❤️ statistics (@kareem_carr) <a href="https://twitter.com/kareem_carr/status/1094993530097991680?ref_src=twsrc%5Etfw">February 11, 2019</a></blockquote>
<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">For data scientists thinking about biases in your data, don&#39;t start by reading the computer science literature. Read epidemiology instead. You need data street smarts, not mathy book smarts. Otherwise the first data set you meet is going to beat you up and take your lunch money!</p>&mdash; Kareem ❤️ statistics (/@/kareem_carr) <a href="https://twitter.com/kareem_carr/status/1094993530097991680?ref_src=twsrc%5Etfw">February 11, 2019</a></blockquote>
<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>


Expand All @@ -238,7 +229,7 @@ Hadley Wickham, [The tidyverse style guide](https://style.tidyverse.org/)

Hadley Wickham, ["Style Guide"](http://adv-r.had.co.nz/Style.html) chapter from [_Advanced R_](http://adv-r.had.co.nz/)

[Coding etiquette](https://ourcodingclub.github.io/2017/04/25/etiquette.html), a guide to writing clear, informative and easy-to-use #RStats code by @CodingClub
[Coding etiquette](https://ourcodingclub.github.io/2017/04/25/etiquette.html), a guide to writing clear, informative and easy-to-use #RStats code by /@/CodingClub


Joel Lee, 2017-12=22, [The Weirdest Programming Principles You’ve Never Heard Of](https://www.makeuseof.com/tag/weird-programming-principles/)
Expand All @@ -252,7 +243,7 @@ John D. Blischak, Emily R. Davenport, Greg Wilson (2016-01-19) ["A Quick Introdu

### Documentation

<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">&quot;Writing documentation is all about making future you remember things that present you knows future you will forget&quot; -- <a href="https://twitter.com/data_stephanie?ref_src=twsrc%5Etfw">@data_stephanie</a> <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/Rladies?src=hash&amp;ref_src=twsrc%5Etfw">#Rladies</a></p>&mdash; R-Ladies Chicago (@RLadiesChicago) <a href="https://twitter.com/RLadiesChicago/status/963576859152744456?ref_src=twsrc%5Etfw">February 14, 2018</a></blockquote>
<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">&quot;Writing documentation is all about making future you remember things that present you knows future you will forget&quot; -- <a href="https://twitter.com/data_stephanie?ref_src=twsrc%5Etfw">/@/data_stephanie</a> <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/Rladies?src=hash&amp;ref_src=twsrc%5Etfw">#Rladies</a></p>&mdash; R-Ladies Chicago (/@/RLadiesChicago) <a href="https://twitter.com/RLadiesChicago/status/963576859152744456?ref_src=twsrc%5Etfw">February 14, 2018</a></blockquote>



Expand Down Expand Up @@ -299,7 +290,7 @@ Dani Marillas, 2017-01-25, ["Don’t document your code. Code your documentation

## General research practice

<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">I didn&#39;t think my &quot;start-up&quot; document for my grad students (the resources I wish *I* had when I started a PhD) would prove to be so popular, so I figured I would share them here. So, here&#39;s what I&#39;ve compiled so far. <a href="https://twitter.com/hashtag/hiddencurriculum?src=hash&amp;ref_src=twsrc%5Etfw">#hiddencurriculum</a> 1/12</p>&mdash; Matt Hauer (@thehauer) <a href="https://twitter.com/thehauer/status/1021179403680862218?ref_src=twsrc%5Etfw">July 22, 2018</a></blockquote>
<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">I didn&#39;t think my &quot;start-up&quot; document for my grad students (the resources I wish *I* had when I started a PhD) would prove to be so popular, so I figured I would share them here. So, here&#39;s what I&#39;ve compiled so far. <a href="https://twitter.com/hashtag/hiddencurriculum?src=hash&amp;ref_src=twsrc%5Etfw">#hiddencurriculum</a> 1/12</p>&mdash; Matt Hauer (/@/thehauer) <a href="https://twitter.com/thehauer/status/1021179403680862218?ref_src=twsrc%5Etfw">July 22, 2018</a></blockquote>



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8 changes: 0 additions & 8 deletions 10_data_theory.rmd
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# Data Theory {#datatheory}


```{r echo = FALSE}
library(knitr)
opts_chunk$set(message = FALSE, warning = FALSE, cache = TRUE)
options(width = 100, dplyr.width = 100)
library(ggplot2)
theme_set(theme_light())
```




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12 changes: 1 addition & 11 deletions 11_data_sources.rmd
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# Data Sources & How to Read Them {#datasources}


```{r echo = FALSE}
library(knitr)
opts_chunk$set(message = FALSE, warning = FALSE, cache = TRUE)
options(width = 100, dplyr.width = 100)
library(ggplot2)
theme_set(theme_light())
```




## Introduction

Expand Down Expand Up @@ -43,7 +33,7 @@ Simon Fraser University Library: [Gender, Sexuality & Women's Studies Informatio
[Gapminder](https://www.gapminder.org/data/) - all indicators displayed in Gapminder World


<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">Anyone know of a good migration dataset? Ideally # of people moving from country i to country j by year</p>&mdash; Savage Jim (@jim_savage_) <a href="https://twitter.com/jim_savage_/status/1094672164928802816?ref_src=twsrc%5Etfw">February 10, 2019</a></blockquote>
<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">Anyone know of a good migration dataset? Ideally # of people moving from country i to country j by year</p>&mdash; Savage Jim (/@/jim_savage_) <a href="https://twitter.com/jim_savage_/status/1094672164928802816?ref_src=twsrc%5Etfw">February 10, 2019</a></blockquote>
<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>


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9 changes: 0 additions & 9 deletions 12_data_reading_fileformat.rmd
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# How to Read Data {#dataformat}


```{r echo = FALSE}
library(knitr)
opts_chunk$set(message = FALSE, warning = FALSE, cache = TRUE)
options(width = 100, dplyr.width = 100)
library(ggplot2)
theme_set(theme_light())
```




## Introduction
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7 changes: 0 additions & 7 deletions 13_anonymity_confidentiality.Rmd
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**_Or,_ Statistical Disclosure Control, Masking, and De-Identification**


```{r echo = FALSE}
library(knitr)
opts_chunk$set(message = FALSE, warning = FALSE, cache = TRUE)
options(width = 100, dplyr.width = 100)
library(ggplot2)
theme_set(theme_light())
```


## Introduction
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12 changes: 1 addition & 11 deletions 15_data_wrangling.Rmd
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# Data Wrangling (emphasis on **dplyr**) {#datawrangling}


```{r echo = FALSE}
library(knitr)
opts_chunk$set(message = FALSE, warning = FALSE, cache = TRUE)
options(width = 100, dplyr.width = 100)
library(ggplot2)
theme_set(theme_light())
```




## Introduction

Expand All @@ -36,7 +26,7 @@ Luis D. Verde, 2018-12-14, [Tidyeval meets PDF table hell](http://luisdva.github

### Working with dates

<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">Updated Turing Test concept:<br>A spreadsheet of dates, hand-entered by interns more than a decade ago, featuring such well-known time formats as &quot;1996ish&quot;, &quot;1941/xd01944&quot;, &quot;1955?&quot; and &quot;WWII.&quot;<br>I&#39;m not worried about AI until someone shows me the algorithm that can make sense of this. <a href="https://t.co/IhzofigX2b">pic.twitter.com/IhzofigX2b</a></p>&mdash; Brooke Watson (@brookLYNevery1) <a href="https://twitter.com/brookLYNevery1/status/954368989181902848?ref_src=twsrc%5Etfw">January 19, 2018</a></blockquote>
<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">Updated Turing Test concept:<br>A spreadsheet of dates, hand-entered by interns more than a decade ago, featuring such well-known time formats as &quot;1996ish&quot;, &quot;1941/xd01944&quot;, &quot;1955?&quot; and &quot;WWII.&quot;<br>I&#39;m not worried about AI until someone shows me the algorithm that can make sense of this. <a href="https://t.co/IhzofigX2b">pic.twitter.com/IhzofigX2b</a></p>&mdash; Brooke Watson (/@/brookLYNevery1) <a href="https://twitter.com/brookLYNevery1/status/954368989181902848?ref_src=twsrc%5Etfw">January 19, 2018</a></blockquote>
<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>


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7 changes: 0 additions & 7 deletions 40_data_visualization.Rmd
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# General {#datavisualization}

```{r echo = FALSE}
library(knitr)
opts_chunk$set(message = FALSE, warning = FALSE, cache = TRUE)
options(width = 100, dplyr.width = 100)
library(ggplot2)
theme_set(theme_light())
```

## Introduction

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9 changes: 1 addition & 8 deletions 41_chart_types.Rmd
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# Chart types {#charttypes}

```{r echo = FALSE}
library(knitr)
opts_chunk$set(message = FALSE, warning = FALSE, cache = TRUE)
options(width = 100, dplyr.width = 100)
library(ggplot2)
theme_set(theme_light())
```


## Chart types: theory and methods
Expand All @@ -26,7 +19,7 @@ Laura DeCicco, 2018-08-10, [Exploring ggplot2 boxplots - Defining limits and adj
Ron Pearson, 2011-01-29, [Boxplots and Beyond – Part I](https://www.r-bloggers.com/boxplots-and-beyond-part-i/) (first in a multi-part series on various distribution plots)


<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">More papers should use this plot type!! <a href="https://t.co/iEglulaMyM">pic.twitter.com/iEglulaMyM</a></p>&mdash; Johanna Rickne (@johannarickne) <a href="https://twitter.com/johannarickne/status/1028174230146478080?ref_src=twsrc%5Etfw">August 11, 2018</a></blockquote>
<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">More papers should use this plot type!! <a href="https://t.co/iEglulaMyM">pic.twitter.com/iEglulaMyM</a></p>&mdash; Johanna Rickne (/@/johannarickne) <a href="https://twitter.com/johannarickne/status/1028174230146478080?ref_src=twsrc%5Etfw">August 11, 2018</a></blockquote>
<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>


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7 changes: 0 additions & 7 deletions 50_quantitative_methods.Rmd
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# Introduction {#quantitativemethods1}

```{r echo = FALSE}
library(knitr)
opts_chunk$set(message = FALSE, warning = FALSE, cache = TRUE)
options(width = 100, dplyr.width = 100)
library(ggplot2)
theme_set(theme_light())
```


## Business analytics
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13 changes: 3 additions & 10 deletions 51_bayesian.Rmd
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# Bayesian Methods {#bayesian}

```{r echo = FALSE}
library(knitr)
opts_chunk$set(message = FALSE, warning = FALSE, cache = TRUE)
options(width = 100, dplyr.width = 100)
library(ggplot2)
theme_set(theme_light())
```



### Theory and methods

[Bayesian statistics: Wikipedia page](https://en.wikipedia.org/wiki/Bayesian_statistics)

Andrew Gelman, John B. Carlin, Hal S. Stern, David B. Dunson, Aki Vehtari, and Donald B. Rubin, 2014, _Bayesian Data Analysis_ (third edition), CRC Press.
Andrew Gelman et al., _Bayesian Data Analysis_ (third edition) [@Gelman_etal_2014].

Robert Grant (2018-08-07) [How (not) to introduce newcomers to Bayesian analysis](https://robertgrantstats.wordpress.com/2018/08/07/how-not-to-introduce-newcomers-to-bayesian-analysis/)


#### R-based

Richard McElreath, 2016, _Statistical Rethinking: A Bayesian Course with Examples in R and Stan_, CRC Press.
Richard McElreath, 2016, _Statistical Rethinking: A Bayesian Course with Examples in R and Stan_ [@McElreath_2016].

* [`rethinking`](https://github.com/rmcelreath/rethinking), the companion R package

* [McElreath's YouTube channel](https://www.youtube.com/channel/UCNJK6_DZvcMqNSzQdEkzvzA), with Statistical Rethinking lectures



Jim Albert, 2009, _Bayesian Computation with R_ (second edition), Springer
Jim Albert, _Bayesian Computation with R_ [@Albert_2009]


David Robinson, [_Introduction to Empirical Bayes_](https://gumroad.com/l/empirical-bayes)
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