Merge pull request #111 from Noam-Elisha/master

Adding testing on every commit.

.github/workflows/manual.yml

@@ -0,0 +1,29 @@
+name: Run quoFEM tests
+
+on: push
+  # workflow_dispatch:
+  # schedule:
+  #   - cron: "0 5 * * *"
+
+jobs:
+  setup_and_test:
+    name: Setup and run tests
+    runs-on: ubuntu-latest
+    environment: quoFEM
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+
+      - name: Bootstrap
+        run: |
+            chmod +x bootstrap.sh
+            sh ./bootstrap.sh
+      - name: Build SimCenter Applications
+        run: |
+            chmod +x build_backend_apps.sh
+            sh ./build_backend_apps.sh
+      - name: Run Examples
+        run: |
+            chmod +x run_examples.sh
+            sh ./run_examples.sh

bootstrap.sh

@@ -0,0 +1,49 @@
+#!/bin/bash
+
+# Updates the package lists for upgrades and new package installations
+sudo apt-get update
+
+# Installs the 'sudo' package. The '-y' flag automatically answers yes to prompts.
+apt-get install -y sudo python3.9
+
+# Install the needed packages
+sudo apt install -y software-properties-common cmake python3-pip git
+
+# Upgrades pip (Python package installer) to the latest version
+sudo python3 -m pip install -U pip
+
+# Installs the Conan package manager
+pip3 install conan==1.60.1
+pip3 install nheri-simcenter
+
+python3 --version
+
+which python3
+
+which conan
+
+wget https://github.com/snl-dakota/dakota/releases/download/v6.15.0/dakota-6.15.0-public-src-cli.tar.gz
+sudo apt-get install -y libboost-dev libboost-all-dev libopenmpi-dev openmpi-bin xorg-dev libmotif-dev 
+tar zxBf dakota-6.15.0-public-src-cli.tar.gz 
+mv dakota-6.15.0-public-src-cli dakota-6.15.0 
+cd dakota-6.15.0 
+mkdir build; cd build 
+cmake .. 
+cmake --build . --config Release 
+cmake --install . 
+cd ../..; rm -fr dakot*   
+
+sudo apt-get install -y cmake liblapack-dev libomp-dev libssl-dev apt-transport-https ca-certificates wget         
+wget -O - https://apt.kitware.com/keys/kitware-archive-latest.asc 2>/dev/null | gpg --dearmor - | sudo tee /etc/apt/trusted.gpg.d/kitware.gpg >/dev/null 
+sudo apt-add-repository "deb https://apt.kitware.com/ubuntu/ $(lsb_release -cs) main" 
+sudo apt-get update 
+sudo apt-get install -y cmake gfortran gcc g++ 
+git clone -b $versionOpenSees --single-branch https://github.com/OpenSees/OpenSees.git 
+cd OpenSees 
+mkdir build; cd build 
+conan install .. --build missing 
+cmake .. 
+cmake --build . --config Release 
+cmake --install . 
+sudo mv ./lib/* /usr/local/lib 
+cd ../..; rm -fr OpenSees

build_backend_apps.sh

@@ -0,0 +1,39 @@
+#!/bin/bash
+
+git clone --branch master --depth 1 https://github.com/NHERI-SimCenter/SimCenterBackendApplications.git
+
+cp ./SimCenterBackendApplications/modules/performUQ/SimCenterUQ/nataf_gsa/CMakeLists.txt.UBUNTU ./SimCenterBackendApplications/modules/performUQ/SimCenterUQ/nataf_gsa/CMakeLists.txt
+
+rm -fr ~/.conan
+
+sudo apt-get install -y liblapack-dev libomp-dev libssl-dev apt-transport-https ca-certificates \
+
+sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
+
+sudo apt-get update
+
+sudo apt-get install -y gcc-10 g++-10 gfortran-10
+
+export CC=gcc-10
+
+export CXX=g++-10
+
+export FC=gfortran-10
+
+conan remote add simcenter https://nherisimcenter.jfrog.io/artifactory/api/conan/simcenter
+
+cd SimCenterBackendApplications
+
+mkdir build
+
+cd build
+
+conan install .. --build missing
+
+cmake ..
+
+cmake --build . --config Release
+
+cmake --install .
+
+cd ../..

main.cpp

@@ -36,6 +36,8 @@ UPDATES, ENHANCEMENTS, OR MODIFICATIONS.
 
 // Written: fmckenna
 
+#include "SimCenterPreferences.h"
+#include "qjsondocument.h"
 #include <QApplication>
 #include <QFile>
 #include <QTime>
@@ -55,6 +57,9 @@ UPDATES, ENHANCEMENTS, OR MODIFICATIONS.
 
 
 
+#include <TapisV3.h>
+
+#include <QSettings>
  // customMessgaeOutput code from web:
  // https://stackoverflow.com/questions/4954140/how-to-redirect-qdebug-qwarning-qcritical-etc-output
 
@@ -158,6 +163,7 @@ int main(int argc, char *argv[])
     //
 
     QString tenant("designsafe");
+
     //QString storage("agave://designsafe.storage.default/")
     QString storage("designsafe.storage.default/");
     QString dirName("quoFEM");
@@ -256,7 +262,25 @@ int main(int argc, char *argv[])
   view.show();
   view.hide();
   ******************************************************************** */
-
+
+  // Make sure the Python environment exists and is up to date
+  //w.updatePythonEnvironment();
+
+  //TapisV3 testing
+//  QString tenantString("designsafe.tapi.io");
+//  TapisV3 *tapis = new TapisV3(tenantString, storage, &dirName);
+//  tapis->login("noamelisha", "Abcdefghijklmnop123456789");
+
+//  QString val;
+//  QFile file1;
+//  file.setFileName("C:/Users/noame/Documents/Tapis/Sample App/job.json");
+//  file.open(QIODevice::ReadOnly | QIODevice::Text);
+//  val = file.readAll();
+//  file.close();
+//  QJsonDocument d = QJsonDocument::fromJson(val.toUtf8());
+//  QJsonObject sett2 = d.object();
+//  tapis->startJob(sett2);
+
   //
   // exe application event-loop
   //

nightly_build.yaml

@@ -0,0 +1,30 @@
+name: Run quoFEM tests
+
+on:
+  workflow_dispatch:
+  schedule:
+    - cron: "0 5 * * *"
+
+jobs:
+  setup_and_test:
+    name: Setup and run tests
+    runs-on: ubuntu-latest
+    environment: quoFEM
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+
+      - name: Bootstrap
+        run: |
+            chmod +x bootstrap.sh
+            sh ./bootstrap.sh
+      - name: Build SimCenter Applications
+        run: |
+            chmod +x build_backend_apps.sh
+            sh ./build_backend_apps.sh
+      - name: Test Examples
+        run: |
+            chmod +x run_examples.sh
+            sh ./run_examples.sh
+

run_examples.sh

@@ -0,0 +1,31 @@
+#!/bin/bash
+
+echo In folder $PWD
+
+# Clone the examples
+git clone --branch master --depth 1 https://github.com/NHERI-SimCenter/quoFEM.git
+
+# Create the working directoy
+mkdir tmp.SimCenter
+mkdir tmp.SimCenter/templatedir
+cp -a $PWD/Examples/qfem-0001/src/. $PWD/tmp.SimCenter/templatedir/
+
+sudo apt-get install jq
+
+inputfile=$PWD/Examples/qfem-0001/src/input.json
+
+echo "doing jq ================="
+echo $(cat $inputfile | jq '. + { "runDir": "'"$PWD/tmp.SimCenter"'" }') > $inputfile
+echo $(cat $inputfile | jq '. + { "localAppDir": "'"$PWD/SimCenterBackendApplications"'" }') > $inputfile
+echo $(cat $inputfile | jq '. + { "remoteAppDir": "'"$PWD/SimCenterBackendApplications"'" }') > $inputfile
+echo $(cat $inputfile | jq '. + { "runType": "runningLocal" }') > $inputfile
+echo "did jq ==================="
+
+echo "catting the thing now ==================="
+cat $inputfile
+
+ls $PWD/tmp.SimCenter/templatedir
+
+# Run the example in the backend
+python $PWD/SimCenterBackendApplications/applications/Workflow/qWHALE.py "runningLocal" $inputfile $PWD/SimCenterBackendApplications/applications/Workflow/WorkflowApplications.json
+