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cleaned up merge with develop in the documentation of the namelists.n…
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,130 @@ | ||
| name: regtest_gnu | ||
| on: [push, pull_request, workflow_dispatch] | ||
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|
||
| # Cancel in-progress workflows when pushing to a branch | ||
| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | ||
| cancel-in-progress: true | ||
|
|
||
| env: | ||
| cache_key: gnu11-1 | ||
| CC: gcc-10 | ||
| FC: gfortran-10 | ||
| CXX: g++-10 | ||
|
|
||
|
|
||
| # Split into a steup step, and a WW3 build step which | ||
| # builds multiple switches in a matrix. The setup is run once and | ||
| # the environment is cached so each build of WW3 can share the dependencies. | ||
|
|
||
| jobs: | ||
| setup: | ||
| runs-on: ubuntu-latest | ||
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|
||
| steps: | ||
| - name: checkout-ww3 | ||
| if: steps.cache-env.outputs.cache-hit != 'true' | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| path: ww3 | ||
| # Cache spack, OASIS, and compiler | ||
| # No way to flush Action cache, so key may have # appended | ||
| - name: cache-env | ||
| id: cache-env | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: | | ||
| spack | ||
| ~/.spack | ||
| work_oasis3-mct | ||
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ww3/model/ci/spack_gnu.yaml') }} | ||
|
|
||
| # Build WW3 spack environment | ||
| - name: install-dependencies-with-spack | ||
| if: steps.cache-env.outputs.cache-hit != 'true' | ||
| run: | | ||
| # Install NetCDF, ESMF, g2, etc using Spack | ||
| sudo apt install cmake | ||
| git clone -c feature.manyFiles=true https://github.com/JCSDA/spack.git | ||
| source spack/share/spack/setup-env.sh | ||
| spack env create ww3-gnu ww3/model/ci/spack_gnu.yaml | ||
| spack env activate ww3-gnu | ||
| spack compiler find | ||
| spack external find cmake | ||
| spack add mpich@3.4.2 | ||
| spack concretize | ||
| spack install --dirty -v | ||
| - name: build-oasis | ||
| if: steps.cache-env.outputs.cache-hit != 'true' | ||
| run: | | ||
| source spack/share/spack/setup-env.sh | ||
| spack env activate ww3-gnu | ||
| export WWATCH3_DIR=${GITHUB_WORKSPACE}/ww3/model | ||
| export OASIS_INPUT_PATH=${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/oasis3-mct | ||
| export OASIS_WORK_PATH=${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/work_oasis3-mct | ||
| cd ww3/regtests/ww3_tp2.14/input/oasis3-mct/util/make_dir | ||
| cmake . | ||
| make VERBOSE=1 | ||
| cp -r ${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/work_oasis3-mct ${GITHUB_WORKSPACE} | ||
| regtest_gnu: | ||
| needs: setup | ||
| runs-on: ubuntu-latest | ||
|
|
||
| steps: | ||
| - name: install-dependencies | ||
| run: | | ||
| sudo apt-get update | ||
| sudo apt-get install doxygen gcovr valgrind | ||
| - name: checkout-ww3 | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| path: ww3 | ||
|
|
||
| - name: cache-env | ||
| id: cache-env | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: | | ||
| spack | ||
| ~/.spack | ||
| work_oasis3-mct | ||
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ww3/model/ci/spack_gnu.yaml') }} | ||
|
|
||
| - name: build-ww3 | ||
| run: | | ||
| source spack/share/spack/setup-env.sh | ||
| spack env activate ww3-gnu | ||
| set -x | ||
| cd ww3 | ||
| export CC=mpicc | ||
| export FC=mpif90 | ||
| export OASISDIR=${GITHUB_WORKSPACE}/work_oasis3-mct | ||
| # mkdir build && cd build | ||
| export LD_LIBRARY_PATH="/home/runner/work/WW3/WW3/spack/var/spack/environments/ww3-gnu/.spack-env/view/:$LD_LIBRARY_PATH" | ||
| # cmake -DSWITCH=${GITHUB_WORKSPACE}/ww3/regtests/unittests/data/switch.io -DCMAKE_BUILD_TYPE=Debug .. | ||
| # make -j2 VERBOSE=1 | ||
| cd ${GITHUB_WORKSPACE}/ww3 | ||
| ls -l | ||
| ${GITHUB_WORKSPACE}/ww3/model/bin/ww3_from_ftp.sh -k | ||
| cd regtests | ||
| ./bin/run_cmake_test -o all -S -T -s PR1_MPI -w work_PR1_MPI -f -p mpirun -n 24 ../model ww3_tp2.5 | ||
| cd ww3_tp2.5 | ||
| ls -l | ||
| cd work_PR1_MPI | ||
| pwd | ||
| ls -l | ||
| # ncdump -h out_pnt.ww3.nc > ncdump_out.txt | ||
| # cat ncdump_out.txt | ||
| # pwd | ||
| # cat ${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.5/out_pnt_ncdump.txt | ||
| # cmp ${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.5/out_pnt_ncdump.txt ncdump_out.txt | ||
| - name: cache-data | ||
| id: cache-data | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: ww3/ww3_from_ftp.v7.14.1.tar.gz | ||
| key: ww3_from_ftp.v7.14.1 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| EnableDoxygen(docs) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,27 @@ | ||
| # Doxygen documentation- Matt Masarik 24-Jul-2024. | ||
| function(EnableDoxygen outdir) | ||
| find_package(Doxygen REQUIRED) | ||
| if (NOT DOXYGEN_FOUND) | ||
| add_custom_target(enable_docs | ||
| COMMAND false | ||
| COMMENT "Doxygen not found") | ||
| return() | ||
| endif() | ||
|
|
||
| set(src_input "${CMAKE_SOURCE_DIR}/model/src") | ||
| set(doc_output "${CMAKE_BINARY_DIR}/${outdir}") | ||
| file(MAKE_DIRECTORY ${CMAKE_BINARY_DIR}/${outdir}/html) | ||
| CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/docs/Doxyfile.in | ||
| ${CMAKE_BINARY_DIR}/${outdir}/Doxyfile @ONLY) | ||
| set(DOXYGEN_GENERATE_HTML YES) | ||
| set(DOXYGEN_QUIET YES) | ||
| add_custom_target(enable_docs | ||
| COMMAND | ||
| ${DOXYGEN_EXECUTABLE} ${CMAKE_BINARY_DIR}/${outdir}/Doxyfile | ||
| WORKING_DIRECTORY | ||
| ${CMAKE_BINARY_DIR}/${outdir} | ||
| COMMENT | ||
| "Generate Doxygen HTML documentation") | ||
| message("-- Doxygen HTML index page: " | ||
| ${CMAKE_BINARY_DIR}/${outdir}/html/index.html) | ||
| endfunction() |
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