Updated peakup. Made a few changes to staff page

_build/html/.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 9e1e264f477b7efdad3c742493da4ad9
+config: 94cd910e4c69a77fd454d364f695ca4b
 tags: 645f666f9bcd5a90fca523b33c5a78b7

_build/html/_sources/staff.rst.txt

@@ -41,18 +41,6 @@ Fly-scanning spectroscopy is still in beta. Below is some information on how to
 
 In order to have coordinated motion, the IVU Delta Tau will take complete control over the motion for the IVU, HDCM Bragg, and HDCM C2X. When a scan is started, the IVU will request control, and when the scan is complete, the IVU will disable control. If the scan is stopped or aborted, this may not clean up properly so it is important to check that control is disabled before moving components in bluesky or CSS.
 
-Check git branch
-****************
-Check the git branch. Currently (2022-10-26), the fly-scanning spectroscopy is only in the fly-scans branch. You can check the current branch using::
-
-        $ git branch
-        * fly-scans
-          master
-
-You can change to the fly-scans branch using::
-
-        git checkout fly-scans
-
 
 CSS-Pages
 *********
@@ -302,6 +290,7 @@ The ``manage-iocs`` tool can be used to monitor the IOC status. SSH into the ser
 
     * You can also ``telnet`` into the IOC using ::
 
+        $ manage-iocs attach exampleIOC
         $ telnet localhost port
 
     * To exit the telnet, type ``Ctrl+]`` and then ``q``.

_build/html/_sources/useful.rst.txt

@@ -17,7 +17,7 @@ Change X-ray energy - *Either command can be used below. The energy can be enter
 
 Optimize the beam - *Maximize the X-ray flux.* ::
 
-    RE(peakup_fine())
+    RE(peakup())
 
 Setting a region of interest - *Set the ROI on the detector. The specific edge is optional.* ::
 
@@ -26,13 +26,20 @@ Setting a region of interest - *Set the ROI on the detector. The specific edge i
 
 XRF Imaging
 ***********
-Fly scan - *Perform a fly scan. Return an image with dimensions (numX, numY)* ::
+Fly scan - *Perform a high-resolution, position-based fly scan. Return an image with dimensions (numX, numY)* ::
 
     Bluesky@SRX [1] RE(nano_scan_and_fly(startX, stopX, numX,
                                          startY, stopY, numY, dwell))
     Bluesky@SRX [2] RE(nano_y_scan_and_fly(startY, stopY, numY,
                                            startX, stopX, numX, dwell))
 
+Fly scan - *Perform a coarse, time-based fly scan. Return an image with dimensions (numX, numY)* ::
+
+    Bluesky@SRX [1] RE(coarse_scan_and_fly(startX, stopX, numX,
+                                           startY, stopY, numY, dwell))
+    Bluesky@SRX [2] RE(coarse_y_scan_and_fly(startY, stopY, numY,
+                                             startX, stopX, numX, dwell))
+
 Step scan - *Perform a step scan. Note: these arguments take a step size, not the number of points.* ::
 
     Bluesky@SRX [1] RE(nano_xrf(startX, stopX, stepX,

_build/html/_static/_sphinx_javascript_frameworks_compat.js

@@ -1,20 +1,9 @@
-/*
- * _sphinx_javascript_frameworks_compat.js
- * ~~~~~~~~~~
- *
- * Compatability shim for jQuery and underscores.js.
- *
- * WILL BE REMOVED IN Sphinx 6.0
- * xref RemovedInSphinx60Warning
+/* Compatability shim for jQuery and underscores.js.
  *
+ * Copyright Sphinx contributors
+ * Released under the two clause BSD licence
  */
 
-/**
- * select a different prefix for underscore
- */
-$u = _.noConflict();
-
-
 /**
  * small helper function to urldecode strings
  *

_build/html/_static/basic.css

@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- basic theme.
  *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -324,17 +324,17 @@ aside.sidebar {
 p.sidebar-title {
     font-weight: bold;
 }
+
 nav.contents,
 aside.topic,
-
 div.admonition, div.topic, blockquote {
     clear: left;
 }
 
 /* -- topics ---------------------------------------------------------------- */
+
 nav.contents,
 aside.topic,
-
 div.topic {
     border: 1px solid #ccc;
     padding: 7px;
@@ -375,7 +375,6 @@ div.sidebar > :last-child,
 aside.sidebar > :last-child,
 nav.contents > :last-child,
 aside.topic > :last-child,
-
 div.topic > :last-child,
 div.admonition > :last-child {
     margin-bottom: 0;
@@ -385,7 +384,6 @@ div.sidebar::after,
 aside.sidebar::after,
 nav.contents::after,
 aside.topic::after,
-
 div.topic::after,
 div.admonition::after,
 blockquote::after {
@@ -611,25 +609,6 @@ ul.simple p {
     margin-bottom: 0;
 }
 
-/* Docutils 0.17 and older (footnotes & citations) */
-dl.footnote > dt,
-dl.citation > dt {
-    float: left;
-    margin-right: 0.5em;
-}
-
-dl.footnote > dd,
-dl.citation > dd {
-    margin-bottom: 0em;
-}
-
-dl.footnote > dd:after,
-dl.citation > dd:after {
-    content: "";
-    clear: both;
-}
-
-/* Docutils 0.18+ (footnotes & citations) */
 aside.footnote > span,
 div.citation > span {
     float: left;
@@ -654,8 +633,6 @@ div.citation > p:last-of-type:after {
     clear: both;
 }
 
-/* Footnotes & citations ends */
-
 dl.field-list {
     display: grid;
     grid-template-columns: fit-content(30%) auto;
@@ -668,10 +645,6 @@ dl.field-list > dt {
     padding-right: 5px;
 }
 
-dl.field-list > dt:after {
-    content: ":";
-}
-
 dl.field-list > dd {
     padding-left: 0.5em;
     margin-top: 0em;