Bump to MTK v9 #342
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Bump to MTK v9 #342
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…machinery to deal with it in blox_utilities.jl: function get_states_without_drive
… external input. Implementation differs from SPM12 since C parameter is not being overwritten when transfer function is being computed but the user-set value is kept.
…w.r.t. potential changes in MTK and pecularities about model assembly. It also deprecates the get_hemodynamic_observers function.
…al) based on Haris's comment to use irreducible to maintain measurement equations which are algebraic equations of dynamic variables. This makes in particular transferfunction_fmri much more elegant and robust.
Spectral DCM with external input and more robust measurements
Basic LIF Neuron with tests using MTK
Also added TestSet for QIF neurons
Still under construction
Simple IF addition
`get_connection_rule` added to blox_utilities to mirror other helper functions for BloxConnector
Basic Izhikevich neurons from Chen and Campbell added
Performance tweaks to spectralDCM code
*Fixed the `I_syn` redundancies *Moved the for `:connection_rule` to `get_connection_rule` *Added parameter ranges for the GUI in the comments
Only returns `rhs` now
Updating single neurons
sDCM code cleanup
Delete old IF, LIF, QIF blox and associated helper functions and tests. Also remove `synaptic_network.jl` as it is fully replaced by `BloxConnector`
Include citations and docstring formatting. Still finishing up QIF and Izhikevich
Synaptic conductances for these need to be scaled appropriately!
Also cleanup
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Closes #349 |
This was referenced Jun 26, 2024
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Further changes needed:
getindex/setindex!methods forMTKParameterswithParameterIndexSciML/ModelingToolkit.jl#2531datafitting.jltestsremakefailing to change the parameters in a problem