build based on c4e0f9a

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.11.2","generation_timestamp":"2025-01-06T18:37:19","documenter_version":"1.8.0"}}
+{"documenter":{"julia_version":"1.11.2","generation_timestamp":"2025-01-07T15:39:24","documenter_version":"1.8.0"}}

dev/assets/Manifest.toml

@@ -1557,10 +1557,9 @@ uuid = "d8e11817-5142-5d16-987a-aa16d5891078"
 version = "0.4.17"
 
 [[deps.MacroTools]]
-deps = ["Markdown", "Random"]
-git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df"
+git-tree-sha1 = "72aebe0b5051e5143a079a4685a46da330a40472"
 uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
-version = "0.5.13"
+version = "0.5.15"
 
 [[deps.Makie]]
 deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"]
@@ -1716,10 +1715,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 version = "1.2.0"
 
 [[deps.Neuroblox]]
-deps = ["Accessors", "CSV", "ChainRules", "Combinatorics", "DSP", "DataFrames", "Distributions", "ExponentialUtilities", "ForwardDiff", "GraphDynamics", "Graphs", "Interpolations", "LinearAlgebra", "LogExpFunctions", "MetaGraphs", "ModelingToolkit", "ModelingToolkitStandardLibrary", "MuladdMacro", "OhMyThreads", "OrderedCollections", "Peaks", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "Statistics", "StatsBase", "StochasticDiffEq", "Symbolics", "ToeplitzMatrices"]
+deps = ["Accessors", "CSV", "ChainRules", "Colors", "Combinatorics", "DSP", "DataFrames", "Distributions", "ExponentialUtilities", "ForwardDiff", "GraphDynamics", "Graphs", "Interpolations", "LinearAlgebra", "LogExpFunctions", "MetaGraphs", "ModelingToolkit", "ModelingToolkitStandardLibrary", "MuladdMacro", "OhMyThreads", "OrderedCollections", "Peaks", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "Statistics", "StatsBase", "StochasticDiffEq", "Symbolics", "ToeplitzMatrices"]
 path = "/home/runner/work/Neuroblox.jl/Neuroblox.jl"
 uuid = "769b91e5-4c60-41ee-bfae-153c84203cb2"
-version = "0.5.3"
+version = "0.5.4"
 weakdeps = ["CairoMakie", "Makie"]
 
     [deps.Neuroblox.extensions]

dev/getting_started/index.html

@@ -78,4 +78,4 @@
 lines!(ax, sol.t, E1, label = "E")
 lines!(ax, sol.t, I1, label = "I")
 Legend(fig[1,2], ax)
-fig</code></pre><img src="8b9d6990.png" alt="Example block output"/><p><a href="https://www.sciencedirect.com/science/article/pii/S0006349572860685">[1] Wilson, H. R., &amp; Cowan, J. D. (1972). Excitatory and inhibitory interactions in localized populations of model neurons. Biophysical journal, 12(1), 1-24.</a></p><p><a href="https://link.springer.com/article/10.1007/s00422-009-0328-3">[2] Destexhe, A., &amp; Sejnowski, T. J. (2009). The Wilson–Cowan model, 36 years later. Biological cybernetics, 101(1), 1-2.</a></p><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../install/">« How to install</a><a class="docs-footer-nextpage" href="../tutorials/resting_state/">Resting state simulation using neural mass models »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Monday 6 January 2025 18:37">Monday 6 January 2025</span>. Using Julia version 1.11.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+fig</code></pre><img src="8b9d6990.png" alt="Example block output"/><p><a href="https://www.sciencedirect.com/science/article/pii/S0006349572860685">[1] Wilson, H. R., &amp; Cowan, J. D. (1972). Excitatory and inhibitory interactions in localized populations of model neurons. Biophysical journal, 12(1), 1-24.</a></p><p><a href="https://link.springer.com/article/10.1007/s00422-009-0328-3">[2] Destexhe, A., &amp; Sejnowski, T. J. (2009). The Wilson–Cowan model, 36 years later. Biological cybernetics, 101(1), 1-2.</a></p><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../install/">« How to install</a><a class="docs-footer-nextpage" href="../tutorials/resting_state/">Resting state simulation using neural mass models »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Tuesday 7 January 2025 15:39">Tuesday 7 January 2025</span>. Using Julia version 1.11.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/install/index.html

@@ -7,4 +7,4 @@
 
 Downloads.download("raw.githubusercontent.com/Neuroblox/NeurobloxDocsHost/refs/heads/main/Project.toml", joinpath(@__DIR__, "Project.toml"))
 Pkg.activate(@__DIR__)
-Pkg.instantiate()</code></pre><p>Please note that after running these commands <code>Neuroblox</code> will also be installed along with all other packages that are used in the tutorials.</p><blockquote><p><strong><em>NOTE</em>:</strong> If you want to install only Neuroblox and not the other packages used in the tutorials you can run </p><pre><code class="language-julia hljs">Pkg.add(&quot;Neuroblox&quot;)</code></pre></blockquote></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Neuroblox</a><a class="docs-footer-nextpage" href="../getting_started/">Getting Started »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Monday 6 January 2025 18:37">Monday 6 January 2025</span>. Using Julia version 1.11.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+Pkg.instantiate()</code></pre><p>Please note that after running these commands <code>Neuroblox</code> will also be installed along with all other packages that are used in the tutorials.</p><blockquote><p><strong><em>NOTE</em>:</strong> If you want to install only Neuroblox and not the other packages used in the tutorials you can run </p><pre><code class="language-julia hljs">Pkg.add(&quot;Neuroblox&quot;)</code></pre></blockquote></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Neuroblox</a><a class="docs-footer-nextpage" href="../getting_started/">Getting Started »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Tuesday 7 January 2025 15:39">Tuesday 7 January 2025</span>. Using Julia version 1.11.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>