build based on 76450d4

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.0","generation_timestamp":"2024-02-09T11:36:50","documenter_version":"1.2.1"}}
+{"documenter":{"julia_version":"1.10.0","generation_timestamp":"2024-02-09T14:40:41","documenter_version":"1.2.1"}}

dev/assets/Manifest.toml

@@ -2673,9 +2673,9 @@ version = "1.0.1"
 
 [[deps.Static]]
 deps = ["IfElse"]
-git-tree-sha1 = "b366eb1eb68075745777d80861c6706c33f588ae"
+git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c"
 uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
-version = "0.8.9"
+version = "0.8.10"
 
 [[deps.StaticArrayInterface]]
 deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"]

dev/getting_started/index.html

@@ -18,7 +18,7 @@
 
 prob = ODEProblem(sys, [], (0.0, 100), [])
 sol = solve(prob, AutoVern7(Rodas4()), saveat=0.1)
-plot(sol)</code></pre><img src="f8874413.svg" alt="Example block output"/><h2 id="Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models"><a class="docs-heading-anchor" href="#Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models">Example 2 : Building a Brain Circuit using Neural Mass Models</a><a id="Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models-1"></a><a class="docs-heading-anchor-permalink" href="#Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models" title="Permalink"></a></h2><p>In this example, we will construct a Parkinsons model from eight Jansen-Rit Neural Mass Models.  The Jansen-Rit Neural Mass model is defined by the following differential equations:</p><p class="math-container">\[\frac{dx}{dt} = y-\frac{2}{\tau}x
+plot(sol)</code></pre><img src="1d73ba25.svg" alt="Example block output"/><h2 id="Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models"><a class="docs-heading-anchor" href="#Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models">Example 2 : Building a Brain Circuit using Neural Mass Models</a><a id="Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models-1"></a><a class="docs-heading-anchor-permalink" href="#Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models" title="Permalink"></a></h2><p>In this example, we will construct a Parkinsons model from eight Jansen-Rit Neural Mass Models.  The Jansen-Rit Neural Mass model is defined by the following differential equations:</p><p class="math-container">\[\frac{dx}{dt} = y-\frac{2}{\tau}x
 \frac{dy}{dt} = -\frac{x}{\tau^2} + \frac{H}{\tau} [\frac{2\lambda}{1+\text{exp}(-r*\sum{jcn})} - \lambda]\]</p><pre><code class="language-julia hljs">using Neuroblox
 using DifferentialEquations
 using Graphs
@@ -62,4 +62,4 @@
 alg = MethodOfSteps(Vern7())
 sol_dde_no_delays = solve(prob, alg, saveat=1)
 
-plot(sol_dde_no_delays)</code></pre><img src="77e31729.svg" alt="Example block output"/></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Neuroblox</a><a class="docs-footer-nextpage" href="../api/">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Friday 9 February 2024 11:36">Friday 9 February 2024</span>. Using Julia version 1.10.0.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+plot(sol_dde_no_delays)</code></pre><img src="35352fcf.svg" alt="Example block output"/></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Neuroblox</a><a class="docs-footer-nextpage" href="../api/">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Friday 9 February 2024 14:40">Friday 9 February 2024</span>. Using Julia version 1.10.0.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/index.html

@@ -4,4 +4,4 @@
 using PkgAuthentication
 PkgAuthentication.install("juliahub.com")
 Pkg.Registry.add()
-Pkg.add(&quot;Neuroblox&quot;)</code></pre><h2 id="Licensing"><a class="docs-heading-anchor" href="#Licensing">Licensing</a><a id="Licensing-1"></a><a class="docs-heading-anchor-permalink" href="#Licensing" title="Permalink"></a></h2><p>Neuroblox is free for non-commerical and academic use. For full details of the license, please see  <a href="https://github.com/Neuroblox/NeurobloxEULA">the Neuroblox EULA</a>. For commercial use, get in contact with sales@neuroblox.org.</p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="getting_started/">Getting Started »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Friday 9 February 2024 11:36">Friday 9 February 2024</span>. Using Julia version 1.10.0.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+Pkg.add(&quot;Neuroblox&quot;)</code></pre><h2 id="Licensing"><a class="docs-heading-anchor" href="#Licensing">Licensing</a><a id="Licensing-1"></a><a class="docs-heading-anchor-permalink" href="#Licensing" title="Permalink"></a></h2><p>Neuroblox is free for non-commerical and academic use. For full details of the license, please see  <a href="https://github.com/Neuroblox/NeurobloxEULA">the Neuroblox EULA</a>. For commercial use, get in contact with sales@neuroblox.org.</p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="getting_started/">Getting Started »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Friday 9 February 2024 14:40">Friday 9 February 2024</span>. Using Julia version 1.10.0.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>