build based on 48bc4b6

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.1","generation_timestamp":"2024-02-15T15:31:58","documenter_version":"1.2.1"}}
+{"documenter":{"julia_version":"1.10.1","generation_timestamp":"2024-02-19T12:41:01","documenter_version":"1.2.1"}}

dev/getting_started/index.html

@@ -18,7 +18,7 @@
 
 prob = ODEProblem(sys, [], (0.0, 100), [])
 sol = solve(prob, AutoVern7(Rodas4()), saveat=0.1)
-plot(sol)</code></pre><img src="bba4b5ce.svg" alt="Example block output"/><h2 id="Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models"><a class="docs-heading-anchor" href="#Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models">Example 2 : Building a Brain Circuit using Neural Mass Models</a><a id="Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models-1"></a><a class="docs-heading-anchor-permalink" href="#Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models" title="Permalink"></a></h2><p>In this example, we will construct a Parkinsons model from eight Jansen-Rit Neural Mass Models.  The Jansen-Rit Neural Mass model is defined by the following differential equations:</p><p class="math-container">\[\frac{dx}{dt} = y-\frac{2}{\tau}x
+plot(sol)</code></pre><img src="2f6c3f9d.svg" alt="Example block output"/><h2 id="Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models"><a class="docs-heading-anchor" href="#Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models">Example 2 : Building a Brain Circuit using Neural Mass Models</a><a id="Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models-1"></a><a class="docs-heading-anchor-permalink" href="#Example-2-:-Building-a-Brain-Circuit-using-Neural-Mass-Models" title="Permalink"></a></h2><p>In this example, we will construct a Parkinsons model from eight Jansen-Rit Neural Mass Models.  The Jansen-Rit Neural Mass model is defined by the following differential equations:</p><p class="math-container">\[\frac{dx}{dt} = y-\frac{2}{\tau}x
 \frac{dy}{dt} = -\frac{x}{\tau^2} + \frac{H}{\tau} [\frac{2\lambda}{1+\text{exp}(-r*\sum{jcn})} - \lambda]\]</p><pre><code class="language-julia hljs">using Neuroblox
 using DifferentialEquations
 using Graphs
@@ -62,4 +62,4 @@
 alg = MethodOfSteps(Vern7())
 sol_dde_no_delays = solve(prob, alg, saveat=1)
 
-plot(sol_dde_no_delays)</code></pre><img src="af35fb53.svg" alt="Example block output"/></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Neuroblox</a><a class="docs-footer-nextpage" href="../api/">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Thursday 15 February 2024 15:31">Thursday 15 February 2024</span>. Using Julia version 1.10.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+plot(sol_dde_no_delays)</code></pre><img src="3d2fbee9.svg" alt="Example block output"/></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Neuroblox</a><a class="docs-footer-nextpage" href="../api/">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Monday 19 February 2024 12:41">Monday 19 February 2024</span>. Using Julia version 1.10.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/index.html

@@ -4,4 +4,4 @@
 using PkgAuthentication
 PkgAuthentication.install("juliahub.com")
 Pkg.Registry.add()
-Pkg.add(&quot;Neuroblox&quot;)</code></pre><h2 id="Licensing"><a class="docs-heading-anchor" href="#Licensing">Licensing</a><a id="Licensing-1"></a><a class="docs-heading-anchor-permalink" href="#Licensing" title="Permalink"></a></h2><p>Neuroblox is free for non-commerical and academic use. For full details of the license, please see  <a href="https://github.com/Neuroblox/NeurobloxEULA">the Neuroblox EULA</a>. For commercial use, get in contact with sales@neuroblox.org.</p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="getting_started/">Getting Started »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Thursday 15 February 2024 15:31">Thursday 15 February 2024</span>. Using Julia version 1.10.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+Pkg.add(&quot;Neuroblox&quot;)</code></pre><h2 id="Licensing"><a class="docs-heading-anchor" href="#Licensing">Licensing</a><a id="Licensing-1"></a><a class="docs-heading-anchor-permalink" href="#Licensing" title="Permalink"></a></h2><p>Neuroblox is free for non-commerical and academic use. For full details of the license, please see  <a href="https://github.com/Neuroblox/NeurobloxEULA">the Neuroblox EULA</a>. For commercial use, get in contact with sales@neuroblox.org.</p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="getting_started/">Getting Started »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Monday 19 February 2024 12:41">Monday 19 February 2024</span>. Using Julia version 1.10.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/release_notes/index.html

@@ -1,2 +1,2 @@
 <!DOCTYPE html>
-<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Release Notes · Neuroblox</title><meta name="title" content="Release Notes · Neuroblox"/><meta property="og:title" content="Release Notes · Neuroblox"/><meta property="twitter:title" content="Release Notes · Neuroblox"/><meta name="description" content="Documentation for Neuroblox."/><meta property="og:description" content="Documentation for Neuroblox."/><meta property="twitter:description" content="Documentation for Neuroblox."/><script data-outdated-warner src="../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL=".."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="../assets/documenter.js"></script><script src="../search_index.js"></script><script src="../siteinfo.js"></script><script src="../../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../assets/themeswap.js"></script><link href="../assets/favicon.ico" rel="icon" type="image/x-icon"/></head><body><div id="documenter"><nav class="docs-sidebar"><a class="docs-logo" href="../"><img src="../assets/logo.png" alt="Neuroblox logo"/></a><div class="docs-package-name"><span class="docs-autofit"><a href="../">Neuroblox</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../">Neuroblox</a></li><li><a class="tocitem" href="../getting_started/">Getting Started</a></li><li><a class="tocitem" href="../api/">API</a></li><li class="is-active"><a class="tocitem" href>Release Notes</a><ul class="internal"><li><a class="tocitem" href="#v0.3"><span>v0.3</span></a></li></ul></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Release Notes</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Release Notes</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/Neuroblox/Neuroblox.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/Neuroblox/Neuroblox.jl/blob/master/docs/src/release_notes.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Release-Notes"><a class="docs-heading-anchor" href="#Release-Notes">Release Notes</a><a id="Release-Notes-1"></a><a class="docs-heading-anchor-permalink" href="#Release-Notes" title="Permalink"></a></h1><h2 id="v0.3"><a class="docs-heading-anchor" href="#v0.3">v0.3</a><a id="v0.3-1"></a><a class="docs-heading-anchor-permalink" href="#v0.3" title="Permalink"></a></h2><p>Initial Release!</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../api/">« API</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Thursday 15 February 2024 15:31">Thursday 15 February 2024</span>. Using Julia version 1.10.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Release Notes · Neuroblox</title><meta name="title" content="Release Notes · Neuroblox"/><meta property="og:title" content="Release Notes · Neuroblox"/><meta property="twitter:title" content="Release Notes · Neuroblox"/><meta name="description" content="Documentation for Neuroblox."/><meta property="og:description" content="Documentation for Neuroblox."/><meta property="twitter:description" content="Documentation for Neuroblox."/><script data-outdated-warner src="../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL=".."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="../assets/documenter.js"></script><script src="../search_index.js"></script><script src="../siteinfo.js"></script><script src="../../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../assets/themeswap.js"></script><link href="../assets/favicon.ico" rel="icon" type="image/x-icon"/></head><body><div id="documenter"><nav class="docs-sidebar"><a class="docs-logo" href="../"><img src="../assets/logo.png" alt="Neuroblox logo"/></a><div class="docs-package-name"><span class="docs-autofit"><a href="../">Neuroblox</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../">Neuroblox</a></li><li><a class="tocitem" href="../getting_started/">Getting Started</a></li><li><a class="tocitem" href="../api/">API</a></li><li class="is-active"><a class="tocitem" href>Release Notes</a><ul class="internal"><li><a class="tocitem" href="#v0.3"><span>v0.3</span></a></li></ul></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Release Notes</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Release Notes</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/Neuroblox/Neuroblox.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/Neuroblox/Neuroblox.jl/blob/master/docs/src/release_notes.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Release-Notes"><a class="docs-heading-anchor" href="#Release-Notes">Release Notes</a><a id="Release-Notes-1"></a><a class="docs-heading-anchor-permalink" href="#Release-Notes" title="Permalink"></a></h1><h2 id="v0.3"><a class="docs-heading-anchor" href="#v0.3">v0.3</a><a id="v0.3-1"></a><a class="docs-heading-anchor-permalink" href="#v0.3" title="Permalink"></a></h2><p>Initial Release!</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../api/">« API</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Monday 19 February 2024 12:40">Monday 19 February 2024</span>. Using Julia version 1.10.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>