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Neuroblox · Oct 19, 2024 · c0c763a · c0c763a
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diff --git a/dev/.documenter-siteinfo.json b/dev/.documenter-siteinfo.json
@@ -1 +1 @@
-{"documenter":{"julia_version":"1.11.1","generation_timestamp":"2024-10-17T15:34:44","documenter_version":"1.7.0"}}
+{"documenter":{"julia_version":"1.11.1","generation_timestamp":"2024-10-19T11:26:23","documenter_version":"1.7.0"}}
diff --git a/dev/api/index.html b/dev/api/index.html
diff --git a/dev/assets/Manifest.toml b/dev/assets/Manifest.toml
@@ -142,10 +142,10 @@ uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
 version = "1.11.0"
 
 [[deps.Automa]]
-deps = ["PrecompileTools", "TranscodingStreams"]
-git-tree-sha1 = "014bc22d6c400a7703c0f5dc1fdc302440cf88be"
+deps = ["PrecompileTools", "SIMD", "TranscodingStreams"]
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 [[deps.AxisAlgorithms]]
 deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"]
@@ -455,9 +455,9 @@ version = "1.11.0"
 
 [[deps.DelaunayTriangulation]]
 deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "PrecompileTools", "Random"]
-git-tree-sha1 = "668bb97ea6df5e654e6288d87d2243591fe68665"
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@@ -1204,9 +1204,9 @@ version = "1.0.62"
 
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@@ -1223,9 +1223,9 @@ version = "0.6.9"
 
 [[deps.Krylov]]
 deps = ["LinearAlgebra", "Printf", "SparseArrays"]
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 uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7"
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+version = "0.9.7"
 
 [[deps.LAME_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1399,9 +1399,9 @@ version = "1.11.0"
 
 [[deps.LinearSolve]]
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-git-tree-sha1 = "8941ad4bdd83768359801982e143008349b1a827"
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     [deps.LinearSolve.extensions]
     LinearSolveBandedMatricesExt = "BandedMatrices"
@@ -1435,9 +1435,9 @@ version = "2.35.0"
 
 [[deps.Literate]]
 deps = ["Base64", "IOCapture", "JSON", "REPL"]
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+version = "2.20.1"
 
 [[deps.LogExpFunctions]]
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@@ -2358,9 +2358,9 @@ version = "0.1.0"
 
 [[deps.SciMLOperators]]
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+version = "0.3.11"
 weakdeps = ["SparseArrays", "StaticArraysCore"]
 
     [deps.SciMLOperators.extensions]
@@ -2695,9 +2695,9 @@ version = "3.7.2"
 
 [[deps.Symbolics]]
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-git-tree-sha1 = "aa3218c29b81384531631b2e5354fdf034a13ec2"
+git-tree-sha1 = "8d763bd8e2e815ae013e9d8aae7c2b427caa96a6"
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-version = "6.14.1"
+version = "6.15.0"
 
     [deps.Symbolics.extensions]
     SymbolicsForwardDiffExt = "ForwardDiff"

diff --git a/dev/assets/neural_assembly_1.png b/dev/assets/neural_assembly_1.png
diff --git a/dev/assets/neural_assembly_2.png b/dev/assets/neural_assembly_2.png
diff --git a/dev/assets/neural_assembly_3.png b/dev/assets/neural_assembly_3.png
diff --git a/dev/assets/neural_assembly_4.png b/dev/assets/neural_assembly_4.png
diff --git a/dev/assets/neural_assembly_5.png b/dev/assets/neural_assembly_5.png
diff --git a/dev/assets/neural_assembly_figures/1.png b/dev/assets/neural_assembly_figures/1.png
diff --git a/dev/assets/neural_assembly_figures/2.png b/dev/assets/neural_assembly_figures/2.png
diff --git a/dev/assets/neural_assembly_figures/3.png b/dev/assets/neural_assembly_figures/3.png
diff --git a/dev/assets/neural_assembly_figures/4.png b/dev/assets/neural_assembly_figures/4.png
diff --git a/dev/assets/neural_assembly_figures/5.png b/dev/assets/neural_assembly_figures/5.png
diff --git a/dev/getting_started/index.html b/dev/getting_started/index.html
@@ -78,4 +78,4 @@
 lines!(ax, sol.t, E1, label = &quot;E&quot;)
 lines!(ax, sol.t, I1, label = &quot;I&quot;)
 Legend(fig[1,2], ax)
-fig</code></pre><img src="8b9d6990.png" alt="Example block output"/><p><a href="https://www.sciencedirect.com/science/article/pii/S0006349572860685">[1] Wilson, H. R., &amp; Cowan, J. D. (1972). Excitatory and inhibitory interactions in localized populations of model neurons. Biophysical journal, 12(1), 1-24.</a></p><p><a href="https://link.springer.com/article/10.1007/s00422-009-0328-3">[2] Destexhe, A., &amp; Sejnowski, T. J. (2009). The Wilson–Cowan model, 36 years later. Biological cybernetics, 101(1), 1-2.</a></p><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../install/">« How to install</a><a class="docs-footer-nextpage" href="../tutorials/resting_state/">Resting state simulation using neural mass models »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Thursday 17 October 2024 15:34">Thursday 17 October 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+fig</code></pre><img src="8b9d6990.png" alt="Example block output"/><p><a href="https://www.sciencedirect.com/science/article/pii/S0006349572860685">[1] Wilson, H. R., &amp; Cowan, J. D. (1972). Excitatory and inhibitory interactions in localized populations of model neurons. Biophysical journal, 12(1), 1-24.</a></p><p><a href="https://link.springer.com/article/10.1007/s00422-009-0328-3">[2] Destexhe, A., &amp; Sejnowski, T. J. (2009). The Wilson–Cowan model, 36 years later. Biological cybernetics, 101(1), 1-2.</a></p><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../install/">« How to install</a><a class="docs-footer-nextpage" href="../tutorials/resting_state/">Resting state simulation using neural mass models »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Saturday 19 October 2024 11:26">Saturday 19 October 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
diff --git a/dev/index.html b/dev/index.html
diff --git a/dev/install/index.html b/dev/install/index.html
@@ -7,4 +7,4 @@
 
 Downloads.download(&quot;raw.githubusercontent.com/Neuroblox/NeurobloxDocsHost/refs/heads/main/Project.toml&quot;, joinpath(@__DIR__, &quot;Project.toml&quot;))
 Pkg.activate(@__DIR__)
-Pkg.instantiate()</code></pre><p>Please note that after running these commands <code>Neuroblox</code> will also be installed along with all other packages that are used in the tutorials.</p><blockquote><p><strong><em>NOTE</em>:</strong> If you want to install only Neuroblox and not the other packages used in the tutorials you can run </p><pre><code class="language-julia hljs">Pkg.add(&quot;Neuroblox&quot;)</code></pre></blockquote></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Neuroblox</a><a class="docs-footer-nextpage" href="../getting_started/">Getting Started »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Thursday 17 October 2024 15:34">Thursday 17 October 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+Pkg.instantiate()</code></pre><p>Please note that after running these commands <code>Neuroblox</code> will also be installed along with all other packages that are used in the tutorials.</p><blockquote><p><strong><em>NOTE</em>:</strong> If you want to install only Neuroblox and not the other packages used in the tutorials you can run </p><pre><code class="language-julia hljs">Pkg.add(&quot;Neuroblox&quot;)</code></pre></blockquote></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Neuroblox</a><a class="docs-footer-nextpage" href="../getting_started/">Getting Started »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Saturday 19 October 2024 11:26">Saturday 19 October 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
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		{"documenter":{"julia_version":"1.11.1","generation_timestamp":"2024-10-17T15:34:44","documenter_version":"1.7.0"}}
		{"documenter":{"julia_version":"1.11.1","generation_timestamp":"2024-10-19T11:26:23","documenter_version":"1.7.0"}}