Deploying to gh-pages from @ ff8e4e7 🚀

Manifest.toml

@@ -1478,9 +1478,9 @@ version = "1.17.0+1"
 
 [[deps.Libmount_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "84eef7acd508ee5b3e956a2ae51b05024181dee0"
+git-tree-sha1 = "89211ea35d9df5831fca5d33552c02bd33878419"
 uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
-version = "2.40.2+2"
+version = "2.40.3+0"
 
 [[deps.Libtiff_jll]]
 deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"]
@@ -1490,9 +1490,9 @@ version = "4.7.1+0"
 
 [[deps.Libuuid_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "edbf5309f9ddf1cab25afc344b1e8150b7c832f9"
+git-tree-sha1 = "e888ad02ce716b319e6bdb985d2ef300e7089889"
 uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700"
-version = "2.40.2+2"
+version = "2.40.3+0"
 
 [[deps.LineSearch]]
 deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"]
@@ -3245,9 +3245,9 @@ version = "1.6.45+1"
 
 [[deps.libsixel_jll]]
 deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"]
-git-tree-sha1 = "1e53ffe8941ee486739f3c0cf11208c26637becd"
+git-tree-sha1 = "bf6bb896bd59692d1074fd69af0e5a1b64e64d5e"
 uuid = "075b6546-f08a-558a-be8f-8157d0f608a5"
-version = "1.10.4+0"
+version = "1.10.4+1"
 
 [[deps.libsodium_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]

assets/literate/neuron_mass.md

@@ -106,7 +106,7 @@ prob = SDEProblem(sys, [], (0, 1000))
 sol = solve(prob, RKMil())
 
 # Plot the powerspectrum of the solution
-fig = powerspectrumplot(hh, sol; samplig_rate=0.01);
+fig = powerspectrumplot(hh, sol; sampling_rate=0.01);
 fig
 save(joinpath(@OUTPUT, "hh_power.svg"), fig); # hide
 ````

assets/literate/neuron_mass_script.jl

@@ -54,7 +54,7 @@ prob = SDEProblem(sys, [], (0, 1000))
 sol = solve(prob, RKMil())
 
 # Plot the powerspectrum of the solution
-fig = powerspectrumplot(hh, sol; samplig_rate=0.01);
+fig = powerspectrumplot(hh, sol; sampling_rate=0.01);
 fig
 save(joinpath(@OUTPUT, "hh_power.svg"), fig); # hide
 

assets/pages/blox_connections/code/output/ex6.res

@@ -1,4 +1,4 @@
-Main.FD_SANDBOX_15604780526313532720.IzhNeuron(ModelingToolkit.ODESystem(0x0000000000001ff8, Symbolics.Equation[Differential(t)(V(t)) ~ 145 + jcn - u(t) + 5V(t) + 0.04(V(t)^2), Differential(t)(u(t)) ~ a*(-u(t) + b*V(t))], t, SymbolicUtils.BasicSymbolic{Real}[V(t), u(t), jcn], SymbolicUtils.BasicSymbolic{Real}[a, b, V_reset, d, θ], nothing, Dict{Any, Any}(:a => a, :b => b, :d => d, :V => V(t), :jcn => jcn, :u => u(t), :θ => θ, :V_reset => V_reset), Any[], Symbolics.Equation[], Base.RefValue{Vector{Symbolics.Num}}(Symbolics.Num[]), Base.RefValue{Any}(Matrix{Symbolics.Num}(undef, 0, 0)), Base.RefValue{Any}(Matrix{Symbolics.Num}(undef, 0, 0)), Base.RefValue{Matrix{Symbolics.Num}}(Matrix{Symbolics.Num}(undef, 0, 0)), Base.RefValue{Matrix{Symbolics.Num}}(Matrix{Symbolics.Num}(undef, 0, 0)), :izh, "", ModelingToolkit.ODESystem[], Dict{Any, Any}(a => 0.02, V_reset => -50, d => 2, u(t) => -13, V(t) => -65.0, b => 0.2, θ => 30), Dict{Any, Any}(), nothing, nothing, Symbolics.Equation[], nothing, nothing, nothing, ModelingToolkit.SymbolicContinuousCallback[], ModelingToolkit.SymbolicDiscreteCallback[condition: V(t) > θ
+Main.FD_SANDBOX_15604780526313532720.IzhNeuron(ModelingToolkit.ODESystem(0x0000000000001ff0, Symbolics.Equation[Differential(t)(V(t)) ~ 145 + jcn - u(t) + 5V(t) + 0.04(V(t)^2), Differential(t)(u(t)) ~ a*(-u(t) + b*V(t))], t, SymbolicUtils.BasicSymbolic{Real}[V(t), u(t), jcn], SymbolicUtils.BasicSymbolic{Real}[a, b, V_reset, d, θ], nothing, Dict{Any, Any}(:a => a, :b => b, :d => d, :V => V(t), :jcn => jcn, :u => u(t), :θ => θ, :V_reset => V_reset), Any[], Symbolics.Equation[], Base.RefValue{Vector{Symbolics.Num}}(Symbolics.Num[]), Base.RefValue{Any}(Matrix{Symbolics.Num}(undef, 0, 0)), Base.RefValue{Any}(Matrix{Symbolics.Num}(undef, 0, 0)), Base.RefValue{Matrix{Symbolics.Num}}(Matrix{Symbolics.Num}(undef, 0, 0)), Base.RefValue{Matrix{Symbolics.Num}}(Matrix{Symbolics.Num}(undef, 0, 0)), :izh, "", ModelingToolkit.ODESystem[], Dict{Any, Any}(a => 0.02, V_reset => -50, d => 2, u(t) => -13, V(t) => -65.0, b => 0.2, θ => 30), Dict{Any, Any}(), nothing, nothing, Symbolics.Equation[], nothing, nothing, nothing, ModelingToolkit.SymbolicContinuousCallback[], ModelingToolkit.SymbolicDiscreteCallback[condition: V(t) > θ
 affects:
   u(t) ~ d + u(t)
   V(t) ~ V_reset

assets/pages/learning/code/output/ex3.out

@@ -1,100 +1,100 @@
-Trial = 1, Category choice = 2, Response = Correct
+Trial = 1, Category choice = 1, Response = False
 Trial = 2, Category choice = 1, Response = Correct
 Trial = 3, Category choice = 1, Response = Correct
-Trial = 4, Category choice = 2, Response = Correct
-Trial = 5, Category choice = 2, Response = False
-Trial = 6, Category choice = 2, Response = Correct
-Trial = 7, Category choice = 2, Response = Correct
-Trial = 8, Category choice = 1, Response = False
+Trial = 4, Category choice = 1, Response = False
+Trial = 5, Category choice = 1, Response = Correct
+Trial = 6, Category choice = 1, Response = False
+Trial = 7, Category choice = 1, Response = False
+Trial = 8, Category choice = 2, Response = Correct
 Trial = 9, Category choice = 1, Response = False
 Trial = 10, Category choice = 1, Response = False
-Trial = 11, Category choice = 1, Response = False
+Trial = 11, Category choice = 2, Response = Correct
 Trial = 12, Category choice = 1, Response = False
-Trial = 13, Category choice = 1, Response = Correct
-Trial = 14, Category choice = 2, Response = Correct
-Trial = 15, Category choice = 2, Response = False
+Trial = 13, Category choice = 2, Response = False
+Trial = 14, Category choice = 1, Response = False
+Trial = 15, Category choice = 1, Response = Correct
 Trial = 16, Category choice = 2, Response = False
 Trial = 17, Category choice = 1, Response = Correct
-Trial = 18, Category choice = 2, Response = False
+Trial = 18, Category choice = 1, Response = Correct
 Trial = 19, Category choice = 2, Response = False
-Trial = 20, Category choice = 1, Response = False
-Trial = 21, Category choice = 2, Response = False
-Trial = 22, Category choice = 2, Response = False
-Trial = 23, Category choice = 2, Response = False
-Trial = 24, Category choice = 1, Response = False
-Trial = 25, Category choice = 1, Response = Correct
+Trial = 20, Category choice = 2, Response = Correct
+Trial = 21, Category choice = 1, Response = Correct
+Trial = 22, Category choice = 1, Response = Correct
+Trial = 23, Category choice = 1, Response = Correct
+Trial = 24, Category choice = 2, Response = Correct
+Trial = 25, Category choice = 2, Response = False
 Trial = 26, Category choice = 1, Response = Correct
-Trial = 27, Category choice = 2, Response = False
-Trial = 28, Category choice = 2, Response = False
+Trial = 27, Category choice = 1, Response = Correct
+Trial = 28, Category choice = 1, Response = Correct
 Trial = 29, Category choice = 1, Response = False
-Trial = 30, Category choice = 1, Response = Correct
-Trial = 31, Category choice = 1, Response = False
+Trial = 30, Category choice = 2, Response = False
+Trial = 31, Category choice = 2, Response = Correct
 Trial = 32, Category choice = 1, Response = Correct
 Trial = 33, Category choice = 1, Response = False
 Trial = 34, Category choice = 1, Response = False
 Trial = 35, Category choice = 2, Response = Correct
 Trial = 36, Category choice = 2, Response = False
 Trial = 37, Category choice = 2, Response = False
 Trial = 38, Category choice = 1, Response = Correct
-Trial = 39, Category choice = 2, Response = Correct
+Trial = 39, Category choice = 1, Response = False
 Trial = 40, Category choice = 1, Response = Correct
 Trial = 41, Category choice = 1, Response = False
 Trial = 42, Category choice = 2, Response = False
 Trial = 43, Category choice = 1, Response = Correct
-Trial = 44, Category choice = 2, Response = Correct
-Trial = 45, Category choice = 1, Response = Correct
-Trial = 46, Category choice = 1, Response = Correct
-Trial = 47, Category choice = 2, Response = False
-Trial = 48, Category choice = 2, Response = Correct
-Trial = 49, Category choice = 2, Response = Correct
-Trial = 50, Category choice = 2, Response = Correct
-Trial = 51, Category choice = 2, Response = False
+Trial = 44, Category choice = 1, Response = False
+Trial = 45, Category choice = 2, Response = False
+Trial = 46, Category choice = 2, Response = False
+Trial = 47, Category choice = 1, Response = Correct
+Trial = 48, Category choice = 1, Response = False
+Trial = 49, Category choice = 1, Response = False
+Trial = 50, Category choice = 1, Response = False
+Trial = 51, Category choice = 1, Response = Correct
 Trial = 52, Category choice = 2, Response = False
-Trial = 53, Category choice = 2, Response = Correct
+Trial = 53, Category choice = 1, Response = False
 Trial = 54, Category choice = 1, Response = False
 Trial = 55, Category choice = 2, Response = Correct
-Trial = 56, Category choice = 1, Response = False
+Trial = 56, Category choice = 2, Response = Correct
 Trial = 57, Category choice = 2, Response = False
 Trial = 58, Category choice = 2, Response = False
-Trial = 59, Category choice = 2, Response = False
-Trial = 60, Category choice = 1, Response = Correct
+Trial = 59, Category choice = 1, Response = Correct
+Trial = 60, Category choice = 2, Response = False
 Trial = 61, Category choice = 1, Response = False
 Trial = 62, Category choice = 2, Response = Correct
 Trial = 63, Category choice = 1, Response = False
-Trial = 64, Category choice = 1, Response = Correct
-Trial = 65, Category choice = 2, Response = False
+Trial = 64, Category choice = 2, Response = False
+Trial = 65, Category choice = 1, Response = Correct
 Trial = 66, Category choice = 2, Response = Correct
-Trial = 67, Category choice = 1, Response = Correct
-Trial = 68, Category choice = 2, Response = Correct
+Trial = 67, Category choice = 2, Response = False
+Trial = 68, Category choice = 1, Response = False
 Trial = 69, Category choice = 2, Response = Correct
-Trial = 70, Category choice = 1, Response = Correct
+Trial = 70, Category choice = 2, Response = False
 Trial = 71, Category choice = 2, Response = False
-Trial = 72, Category choice = 2, Response = Correct
+Trial = 72, Category choice = 1, Response = False
 Trial = 73, Category choice = 2, Response = Correct
 Trial = 74, Category choice = 1, Response = Correct
-Trial = 75, Category choice = 1, Response = Correct
-Trial = 76, Category choice = 1, Response = False
-Trial = 77, Category choice = 1, Response = Correct
+Trial = 75, Category choice = 2, Response = False
+Trial = 76, Category choice = 2, Response = Correct
+Trial = 77, Category choice = 2, Response = False
 Trial = 78, Category choice = 2, Response = False
 Trial = 79, Category choice = 2, Response = False
 Trial = 80, Category choice = 2, Response = False
-Trial = 81, Category choice = 1, Response = False
-Trial = 82, Category choice = 1, Response = Correct
-Trial = 83, Category choice = 1, Response = Correct
+Trial = 81, Category choice = 2, Response = Correct
+Trial = 82, Category choice = 2, Response = False
+Trial = 83, Category choice = 2, Response = False
 Trial = 84, Category choice = 2, Response = Correct
-Trial = 85, Category choice = 2, Response = Correct
+Trial = 85, Category choice = 1, Response = False
 Trial = 86, Category choice = 1, Response = Correct
-Trial = 87, Category choice = 2, Response = False
+Trial = 87, Category choice = 1, Response = Correct
 Trial = 88, Category choice = 2, Response = False
 Trial = 89, Category choice = 1, Response = False
-Trial = 90, Category choice = 1, Response = Correct
-Trial = 91, Category choice = 2, Response = Correct
-Trial = 92, Category choice = 2, Response = False
+Trial = 90, Category choice = 2, Response = False
+Trial = 91, Category choice = 1, Response = False
+Trial = 92, Category choice = 1, Response = Correct
 Trial = 93, Category choice = 2, Response = Correct
-Trial = 94, Category choice = 2, Response = Correct
-Trial = 95, Category choice = 1, Response = Correct
+Trial = 94, Category choice = 1, Response = False
+Trial = 95, Category choice = 2, Response = False
 Trial = 96, Category choice = 1, Response = False
-Trial = 97, Category choice = 2, Response = Correct
+Trial = 97, Category choice = 1, Response = False
 Trial = 98, Category choice = 2, Response = Correct
-Trial = 99, Category choice = 2, Response = False
+Trial = 99, Category choice = 1, Response = Correct
 Trial = 100, Category choice = 1, Response = Correct

assets/pages/learning/code/output/ex3.res

@@ -1 +1 @@
-(trial = [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100], correct = Bool[1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 0, 0, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 1, 0, 1, 0, 0, 1, 0, 0, 1, 1, 1, 0, 0, 1, 1, 1, 1, 0, 1, 1, 1, 0, 0, 1, 0, 1, 0, 0, 0, 0, 1, 0, 1, 0, 1, 0, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 1, 1, 0, 1, 1, 1, 0, 1, 1, 0, 1], action = [2, 1, 1, 2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 2, 2, 2, 1, 2, 2, 1, 2, 2, 2, 1, 1, 1, 2, 2, 1, 1, 1, 1, 1, 1, 2, 2, 2, 1, 2, 1, 1, 2, 1, 2, 1, 1, 2, 2, 2, 2, 2, 2, 2, 1, 2, 1, 2, 2, 2, 1, 1, 2, 1, 1, 2, 2, 1, 2, 2, 1, 2, 2, 2, 1, 1, 1, 1, 2, 2, 2, 1, 1, 1, 2, 2, 1, 2, 2, 1, 1, 2, 2, 2, 2, 1, 1, 2, 2, 2, 1])
+(trial = [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100], correct = Bool[0, 1, 1, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 0, 1, 0, 1, 1, 0, 1, 1, 1, 1, 1, 0, 1, 1, 1, 0, 0, 1, 1, 0, 0, 1, 0, 0, 1, 0, 1, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 1, 1, 0, 0, 1, 0, 0, 1, 0, 0, 1, 1, 0, 0, 1, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 1, 1, 1], action = [1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 2, 1, 2, 1, 1, 2, 1, 1, 2, 2, 1, 1, 1, 2, 2, 1, 1, 1, 1, 2, 2, 1, 1, 1, 2, 2, 2, 1, 1, 1, 1, 2, 1, 1, 2, 2, 1, 1, 1, 1, 1, 2, 1, 1, 2, 2, 2, 2, 1, 2, 1, 2, 1, 2, 1, 2, 2, 1, 2, 2, 2, 1, 2, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 2, 1, 2, 1, 1, 2, 1, 2, 1, 1, 2, 1, 1])

assets/pages/neuron_mass/code/ex7.jl

@@ -8,6 +8,6 @@ prob = SDEProblem(sys, [], (0, 1000))
 sol = solve(prob, RKMil())
 
 # Plot the powerspectrum of the solution
-fig = powerspectrumplot(hh, sol; samplig_rate=0.01);
+fig = powerspectrumplot(hh, sol; sampling_rate=0.01);
 fig
 save(joinpath(@OUTPUT, "hh_power.svg"), fig); # hide