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@Noble-Lab

Noble Lab Department of Genome Sciences UW

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  1. casanovo casanovo Public

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    Python 120 40

  2. crema crema Public

    Confidence Estimation for Mass Spectrometry Proteomics

    Python 12 1

  3. Carafe Carafe Public

    High quality in silico spectral library generation for data-independent acquisition proteomics

    Java 11 1

  4. HiCFoundation HiCFoundation Public

    HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.

    Python 10

  5. Pepper Pepper Public

    Peptide coefficient predictor

    Jupyter Notebook 9 2

  6. 2023-prot-impute-benchmark 2023-prot-impute-benchmark Public

    The GitHub repository accompanying our 2023 quantitative proteomics imputation methods benchmarking study

    Jupyter Notebook 8

Repositories

Showing 10 of 37 repositories
  • casanovo Public

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    Noble-Lab/casanovo’s past year of commit activity
    Python 120 Apache-2.0 40 35 (3 issues need help) 7 Updated Jan 16, 2025
  • HiCFoundation Public

    HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.

    Noble-Lab/HiCFoundation’s past year of commit activity
    Python 10 Apache-2.0 0 0 0 Updated Jan 13, 2025
  • Noble-Lab/HiCFoundation_paper’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Jan 13, 2025
  • cascadia Public

    Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data

    Noble-Lab/cascadia’s past year of commit activity
    Python 7 Apache-2.0 4 0 0 Updated Dec 13, 2024
  • Icebear Public
    Noble-Lab/Icebear’s past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Dec 4, 2024
  • Carafe Public

    High quality in silico spectral library generation for data-independent acquisition proteomics

    Noble-Lab/Carafe’s past year of commit activity
    Java 11 Apache-2.0 1 4 0 Updated Nov 30, 2024
  • Noble-Lab/multi-species-benchmark’s past year of commit activity
    Python 1 0 0 0 Updated Nov 8, 2024
  • FDRBench Public

    Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment

    Noble-Lab/FDRBench’s past year of commit activity
    Java 7 Apache-2.0 1 2 0 Updated Oct 31, 2024
  • lupine Public

    Mass spectrometry proteomics imputation with a multilayer perceptron

    Noble-Lab/lupine’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 23, 2024
  • Sphinx Public
    Noble-Lab/Sphinx’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 17, 2024

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