Added Real Results Output

[mikemhenry]

How much do we want to trim out? I was thinking it might be nice to keep part of it so it might be like:

# stuff
[continues]
│   ├── shared_RelativeHybridTopologyProtocolUnit-8ed001eb1c994ee794d07d8656d2d759_attempt_0
│   │   ├── checkpoint.nc
│   │   ├── db.json
│   │   ├── nan-error-logs
│   │   │   ├── iteration0-replica6-state6-integrator.xml
│   │   │   ├── iteration0-replica6-state6-move.json
│   │   │   ├── iteration0-replica6-state6-state.xml
│   │   │   └── iteration0-replica6-state6-system.xml
│   │   └── simulation.nc
[continues]

So they could see a bit of the top and also what the nan logs look like.

[github-actions]

👈 Launch a binder notebook on branch OpenFreeEnergy/ExampleNotebooks/feat/update_results

[mikemhenry]

I included all the output so we could decide what we wanted to keep.