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Merge pull request #136 from asmacdo/fixup-walkthrough-no-datalad-get
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Remove --no-datalad-get in walkthrough
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yarikoptic authored Jan 15, 2025
2 parents 78c9520 + c1869b2 commit 0e3aa74
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Expand Up @@ -265,6 +265,15 @@ specified in the `.gitmodules`. By freezing into the top-level dataset
instead, authors do not need to host a modified version of
`///reporonim/containers`.
### Fixup datalad config
The version of mriqc we are using does not have an option `--no-datalad-get` which is hardcoded
into mriqc config, so we should remove it.
```bash
datalad run -m "Remove ad-hoc option for mriqc for older frozen version" sed -i -e 's, --no-datalad-get,,g' .datalad/config
```
### Running the Containers
When we run the bids-mriqc container, it will need a working directory
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