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Merge pull request #165 from chaselgrove/relative-links
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Make local links server-relative
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chaselgrove authored Dec 31, 2024
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8 changes: 4 additions & 4 deletions content/resources/getting-started/_index.md
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ReproNim offers best practices, tools and training to implement reproducible neuroimaging in your lab. Here is a brief overview of our website:

* **New to reproducible neuroimaging?**
* [Why reproducible neuroimaging](https://repronim.netlify.app/about/why/)
* [Why reproducible neuroimaging](/about/why/)
* [What is reproducible neuroimaging?](/about/why/#what-is-reproducible-neuroimaging)
* [ReproNim's principles and supporting actions](/about/in-practice/) for reproducible neuroimaging
* **Wondering what ReproNim can do for you?**
* Meet our [exemplary user personas and the issues they face in running neuroimaging studies](/resources/getting-started/#meet-our-user-personas)
* View our introduction to the [ReproNim approach](/about/repronim-approach/) and some step-by-step tutorials on how to use ReproNim tools to improve your ability to perform robust and shareable neuroimaging studies
* **Tools and how-to guide:**
* Our [Resource](https://repronim.netlify.app/resources/) section provides a listing of [tools](/resources/tools/) and [tutorials](/resources/tutorials/) on how to use them to support principles of reproducible neuroimaging
* Our [Resource](/resources/) section provides a listing of [tools](/resources/tools/) and [tutorials](/resources/tutorials/) on how to use them to support principles of reproducible neuroimaging
* **Training:**
* [On-line training course](https://www.repronim.org/teach.html) on a range of basic and more advanced topics related to reproducible neuroimaging
* [ReproNim Fellows Program](/fellowship/): Become a ReproNim fellow through our train the trainer program
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**Use cases that might be of interest to Evelyn:**

* Planning and data management: Learn how a data collection and annotation framework for behavioral data to be collected can be set up using [ReproSchema and shared across multiple sites](https://repronim.netlify.app/resources/tutorials/reproschema/).
* Planning and data management: Learn how a data collection and annotation framework for behavioral data to be collected can be set up using [ReproSchema and shared across multiple sites](/resources/tutorials/reproschema/).
* Principles: planning, data management
* Actions: standards, annotations
* Basic software management for distributed data: [Curating and processing a single study to generate standardized, analysis-ready data to participate in distributed projects using Nipoppy](/resources/tutorials/nipoppy/)
* Principles: Software management
* Standards: Standards, annotation
* Advanced data management: [Adding standards and semantics to data dictionaries to promote data harmonization and findability](https://repronim.netlify.app/resources/tutorials/data-dictionary/)
* Advanced data management: [Adding standards and semantics to data dictionaries to promote data harmonization and findability](/resources/tutorials/data-dictionary/)
* Principles: data management, FAIR
* Actions: Standards, Annotation
* Advanced metadata management: [Searching and sharing metadata through ReproPond and ReproLake](/resources/tutorials/pond-lake/)
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2 changes: 1 addition & 1 deletion content/resources/tools/neurobagel/_index.md
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- https://neurobagel.org/user_guide/query_tool/
- https://neurobagel.org/user_guide/getting_started/
- https://neurobagel.org/user_guide/data_prep/
- [Searching across study metadata using ReproPonds, ReproLake and Neurobagel](https://repronim.netlify.app/resources/tutorials/pond-lake/)
- [Searching across study metadata using ReproPonds, ReproLake and Neurobagel](/resources/tutorials/pond-lake/)
- Full documentation: https://neurobagel.org/user_guide/
- How to get help: https://neurostars.org/tag/neurobagel
- Testimonials: https://www.linkedin.com/posts/evavanheese789_you-only-realise-how-important-infrastructure-activity-7220000830463053828-QdDy
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2 changes: 1 addition & 1 deletion content/resources/tools/pynidm/_index.md
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## Links

- Home page: https://pynidm.readthedocs.io/
- Tutorial: [Creating a BIDS data dictionary and adding semantics for FAIR](https://repronim.netlify.app/resources/tutorials/data-dictionary/)
- Tutorial: [Creating a BIDS data dictionary and adding semantics for FAIR](/resources/tutorials/data-dictionary/)
- Installation: https://pynidm.readthedocs.io/en/latest/#installation
- Full documentation: https://pynidm.readthedocs.io/
- How to get help: https://github.com/incf-nidash/PyNIDM/issues
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2 changes: 1 addition & 1 deletion content/resources/tutorials/_index.md
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**Principle 1: Study Planning**

* Creating a [neuroimaging data management and sharing plan](/resources/tutorials/data-management-and-sharing/)
* Set up a data collection and annotation framework for a multisite study using [ReproSchema](https://repronim.netlify.app/resources/tutorials/reproschema/).
* Set up a data collection and annotation framework for a multisite study using [ReproSchema](/resources/tutorials/reproschema/).

**Principle 2: Data and metadata management**

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