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@SCAI-BIO

Fraunhofer SCAI Bioinformatics Department

Deparment of Bioinformatics at Fraunhofer SCAI

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  1. MultiGML MultiGML Public

    MultiGML

    Python 8 4

  2. MultiNODEs MultiNODEs Public

    Python 6 2

  3. ExMed-BERT ExMed-BERT Public

    Python 6 1

  4. STEP STEP Public

    Data and code for STEP (Siamese Twin deep sequence Embedding of Proteins) approach.

    Python 5 3

  5. datastew datastew Public

    Python library for intelligent data stewardship using Large Language Model (LLM) embeddings

    Python 4

  6. index index Public

    Intelligent data steward toolbox using Large Language Model embeddings for automated Data-Harmonization

    TypeScript 3 1

Repositories

Showing 10 of 36 repositories
  • syndat Public

    Synthetic data quality evaluation & visualization

    SCAI-BIO/syndat’s past year of commit activity
    Python 2 MIT 0 3 0 Updated Jan 25, 2025
  • SEEDS Public

    SEEDS (Similarity based Expert Embedding Decision System) is a Retrieval-Augmented Generation (RAG) based agricultural question-answering (QA) system. It is built upon a domain-specific knowledge graph (KG), representing Cedar Apple Rust disease.

    SCAI-BIO/SEEDS’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Jan 24, 2025
  • datastew Public

    Python library for intelligent data stewardship using Large Language Model (LLM) embeddings

    SCAI-BIO/datastew’s past year of commit activity
    Python 4 Apache-2.0 0 14 1 Updated Jan 24, 2025
  • index Public

    Intelligent data steward toolbox using Large Language Model embeddings for automated Data-Harmonization

    SCAI-BIO/index’s past year of commit activity
    TypeScript 3 Apache-2.0 1 3 1 Updated Jan 23, 2025
  • covid-NDD-comorbidity-NLP Public

    This work aims to integrate diverse, curated biological databases with a comprehensive analysis of the growing body of literature on the potential long-term neurological consequences of COVID-19 infections, employing advanced natural language processing and text mining techniques.

    SCAI-BIO/covid-NDD-comorbidity-NLP’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 22, 2025
  • PDataViewer Public

    Parkinsons Disease cohort landscape visualization

    SCAI-BIO/PDataViewer’s past year of commit activity
    TypeScript 3 Apache-2.0 0 4 0 Updated Jan 14, 2025
  • BiomarkerOntology Public

    The Biomarker Ontology

    SCAI-BIO/BiomarkerOntology’s past year of commit activity
    0 0 0 0 Updated Nov 26, 2024
  • causal-npi-effects Public

    A causal machine learning framework to assess effects of non-pharmaceutical interventions on pandemic disease spread.

    SCAI-BIO/causal-npi-effects’s past year of commit activity
    Python 0 0 0 0 Updated Oct 15, 2024
  • MMPK-SciML Public

    Official implementation of the paper Scientific Machine learning for predicting plasma concentrations in anti-cancer therapy

    SCAI-BIO/MMPK-SciML’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 23, 2024
  • Dynamic_Ensemble Public

    A Dynamic Ensemble Model for short-term Forecasting in Pandemic Situations

    SCAI-BIO/Dynamic_Ensemble’s past year of commit activity
    Python 0 0 0 0 Updated Sep 18, 2024
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