Neutrino simulation automation

Files to run SND@LHC and AdvSND neutrino simulation (and maybe other simulations later?) in a reliable and reproducible way.

Goals

Run all steps (skip completed steps): condor_submit_dag all.dag
Run a particular step: condor_submit <step>.sub
Check how many output files exist: ./check_files <step> (used by the DAG to skip completed steps)

A lot of variables need to be kept in synch across jobs an scripts. How to avoid this?
DAG needs the entire step to complete. Any way to have Child B of Parent A run on subjobs?

Name		Name	Last commit message	Last commit date
Latest commit History 23 Commits
README.md		README.md
Snakefile		Snakefile
all.dag		all.dag
check_files.sh		check_files.sh
config.sh		config.sh
config.yaml		config.yaml
convert_ghep_gst.sh		convert_ghep_gst.sh
convert_ghep_gst.sub		convert_ghep_gst.sub
digitise.sh		digitise.sh
digitise.sub		digitise.sub
env_cleanup.sh		env_cleanup.sh
gdml_convert.py		gdml_convert.py
generate_input_file.sh		generate_input_file.sh
generate_input_file.sub		generate_input_file.sub
pat_rec.sh		pat_rec.sh
pat_rec.sub		pat_rec.sub
transport_neutrinos.sh		transport_neutrinos.sh
transport_neutrinos.sub		transport_neutrinos.sub