[SCHEMATIC-208] fix slow test times

[andrewelamb]

• Fixes SCHEMATIC-208
• Removes test_create_table
• Lowers test folders to copy in test manifest

[BryanFauble]

I was hoping to be able to look at code coverage before/after the changes, but it seems that code coverage in sonarcloud broke in December:

https://sonarcloud.io/project/activity?from=2024-09-05T10%3A25%3A26%2B0000&graph=coverage&id=Sage-Bionetworks_schematic&to=2025-01-04T03%3A53%3A46%2B0000

If you have time while working on these changes getting code coverage working again would be amazing!

Code coverage works by passing an XML file to sonarcloud based on this github workflow code:

schematic/.github/workflows/test.yml

Lines 191 to 204 in 48da1c0

	- name: Download coverage report
	uses: actions/download-artifact@v4
	if: steps.check_coverage_report.outputs.exists == 'true'
	with:
	name: coverage-report
	- name: Check coverage.xml file existence
	id: check_coverage_xml
	uses: andstor/file-existence-action@v3
	with:
	files: "coverage.xml"
	# This is a workaround described in https://community.sonarsource.com/t/sonar-on-github-actions-with-python-coverage-source-issue/36057
	- name: Override Coverage Source Path for Sonar
	if: steps.check_coverage_xml.outputs.files_exists == 'true'
	run: sed -i "s/<source>\/home\/runner\/work\/schematic\/schematic\/schematic<\/source>/<source>\/github\/workspace\/schematic<\/source>/g" coverage.xml

[BryanFauble]

Looks good to me! I would like to see # of covered lines before/after the changes though (See my comment)

[GiaJordan]

LGTM! I know you mentioned also removing the parameterization from the remaining tests; does that need to be done in a later PR?

[thomasyu888]

Looks good to me! I would like to see # of covered lines before/after the changes though (See my comment)

Upvoting this. Thanks everyone!

[linglp]

Looks good to me too but also likes to see code coverage.

[andrewelamb]

So somewhere around here, the Sonarcloud cation became depricated, and also stopped working. I'm goign to try updating to the suggested action and see if that works.

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud

[thomasyu888]

🔥 see this chat for validation: https://sagebionetworks.slack.com/archives/C028KRF7ZA5/p1736529492842709