Revision of the vignette

.Rbuildignore

@@ -1,25 +1,19 @@
-.DS_Store
-.gitignore
-.git
-.git/*
-README.md
-FAQ.md
-TODO.md
-CODE_OF_CONDUCT.md
-LICENSE.md
-Makefile
-.Rprofile
+^\.DS_Store$
 ^\.Rproj\.user$
-^\.*\Rproj$
-^\.travis\.yml$
-^appveyor\.yml$
-^codecov\.yml$
-^.*\.Rproj$
-^doc$
-^Meta$
-^_pkgdown\.yml$
-^docs$
-^pkgdown$
+^.+\.Rproj$
+^\.gitignore$
+^\.git$
 ^\.github$
+^Makefile$
+^\.Rprofile$
 ^revdep$
+^codecov\.yml$
+^CODE_OF_CONDUCT\.md$
+^FAQ\.md$
+^LICENSE\.md$
 ^README\.Rmd$
+^README\.Rmd$
+^TODO\.md$
+^_pkgdown\.yml$
+^pkgdown$
+^docs$

.github/workflows/R-CMD-check.yaml

@@ -29,7 +29,7 @@ jobs:
       R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -47,3 +47,4 @@ jobs:
       - uses: r-lib/actions/check-r-package@v2
         with:
           upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

.github/workflows/pkgdown.yaml

@@ -19,8 +19,10 @@ jobs:
       group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -43,7 +45,7 @@ jobs:
 
       - name: Deploy to GitHub pages 🚀
         if: github.event_name != 'pull_request'
-        uses: JamesIves/github-pages-deploy-action@4.1.4
+        uses: JamesIves/github-pages-deploy-action@4.5.0
         with:
           clean: false
           branch: gh-pages

.github/workflows/test-coverage.yaml

@@ -0,0 +1,53 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: test-coverage
+
+jobs:
+  test-coverage:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::covr
+          needs: coverage
+
+      - name: Test coverage
+        run: |
+          token <- Sys.getenv("CODECOV_TOKEN", "")
+          covr::codecov(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package"),
+            token = if (token != "") token
+          )
+        shell: Rscript {0}
+
+      - name: Show testthat output
+        if: always()
+        run: |
+          ## --------------------------------------------------------------------
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package

.gitignore

@@ -4,6 +4,7 @@
 
 # Session Data files
 .RData
+.RDataTmp
 
 # User-specific files
 .Ruserdata
@@ -38,11 +39,19 @@ vignettes/*.pdf
 # R Environment Variables
 .Renviron
 
-# Locally generated pkgdown site
-docs
+# pkgdown site
 docs/
 
+# translation temp files
+po/*~
+
+# RStudio Connect folder
+rsconnect/
+.Rproj.user
+
 # Mac files
 .DS_Store
-doc
-Meta
+
+# More files
+inst/doc
+docs

CODE_OF_CONDUCT.md

@@ -6,8 +6,8 @@ We as members, contributors, and leaders pledge to make participation in our
 community a harassment-free experience for everyone, regardless of age, body
 size, visible or invisible disability, ethnicity, sex characteristics, gender
 identity and expression, level of experience, education, socio-economic status,
-nationality, personal appearance, race, religion, or sexual identity and
-orientation.
+nationality, personal appearance, race, caste, color, religion, or sexual
+identity and orientation.
 
 We pledge to act and interact in ways that contribute to an open, welcoming,
 diverse, inclusive, and healthy community.
@@ -21,25 +21,25 @@ community include:
 * Being respectful of differing opinions, viewpoints, and experiences
 * Giving and gracefully accepting constructive feedback
 * Accepting responsibility and apologizing to those affected by our mistakes,
-and learning from the experience
+  and learning from the experience
 * Focusing on what is best not just for us as individuals, but for the overall
-community
+  community
 
 Examples of unacceptable behavior include:
 
-* The use of sexualized language or imagery, and sexual attention or
-advances of any kind
+* The use of sexualized language or imagery, and sexual attention or advances of
+  any kind
 * Trolling, insulting or derogatory comments, and personal or political attacks
 * Public or private harassment
-* Publishing others' private information, such as a physical or email
-address, without their explicit permission
+* Publishing others' private information, such as a physical or email address,
+  without their explicit permission
 * Other conduct which could reasonably be considered inappropriate in a
-professional setting
+  professional setting
 
 ## Enforcement Responsibilities
 
-Community leaders are responsible for clarifying and enforcing our standards
-of acceptable behavior and will take appropriate and fair corrective action in
+Community leaders are responsible for clarifying and enforcing our standards of
+acceptable behavior and will take appropriate and fair corrective action in
 response to any behavior that they deem inappropriate, threatening, offensive,
 or harmful.
 
@@ -50,17 +50,17 @@ decisions when appropriate.
 
 ## Scope
 
-This Code of Conduct applies within all community spaces, and also applies
-when an individual is officially representing the community in public spaces.
-Examples of representing our community include using an official e-mail
-address, posting via an official social media account, or acting as an appointed
+This Code of Conduct applies within all community spaces, and also applies when
+an individual is officially representing the community in public spaces.
+Examples of representing our community include using an official e-mail address,
+posting via an official social media account, or acting as an appointed
 representative at an online or offline event.
 
 ## Enforcement
 
 Instances of abusive, harassing, or otherwise unacceptable behavior may be
-reported to the community leaders responsible for enforcement at [INSERT CONTACT
-METHOD]. All complaints will be reviewed and investigated promptly and fairly.
+reported to the community leaders responsible for enforcement at phgrosjean@sciviews.org. 
+All complaints will be reviewed and investigated promptly and fairly.
 
 All community leaders are obligated to respect the privacy and security of the
 reporter of any incident.
@@ -114,15 +114,13 @@ community.
 ## Attribution
 
 This Code of Conduct is adapted from the [Contributor Covenant][homepage],
-version 2.0,
-available at https://www.contributor-covenant.org/version/2/0/
-code_of_conduct.html.
+version 2.1, available at
+<https://www.contributor-covenant.org/version/2/1/code_of_conduct.html>.
 
-Community Impact Guidelines were inspired by [Mozilla's code of conduct
-enforcement ladder](https://github.com/mozilla/diversity).
-
-[homepage]: https://www.contributor-covenant.org
+Community Impact Guidelines were inspired by
+[Mozilla's code of conduct enforcement ladder][https://github.com/mozilla/inclusion].
 
 For answers to common questions about this code of conduct, see the FAQ at
-https://www.contributor-covenant.org/faq. Translations are available at https://
-www.contributor-covenant.org/translations.
+<https://www.contributor-covenant.org/faq>. Translations are available at <https://www.contributor-covenant.org/translations>.
+
+[homepage]: https://www.contributor-covenant.org

DESCRIPTION

@@ -1,16 +1,20 @@
 Package: modelit
 Type: Package
-Version: 1.4.3
-Title: 'SciViews' - Statistical Models Within 'SciViews::R'
-Description: Create and Use Statistical Models (Linear, General, Nonlinear, ...)
-  by using a SciViews::R common formula interface and label-aware functions.
+Version: 1.4.4
+Title: Statistical Models for 'SciViews::R'
+Description: Create and use statistical models (linear, general, nonlinear...)
+  with extensions to support rich-formatted tables, equations and plots for the
+  'SciViews::R' dialect.
 Authors@R: c( 
   person("Philippe", "Grosjean", role = c("aut", "cre"),
-  email = "phgrosjean@sciviews.org",
-  comment = c(ORCID = "0000-0002-2694-9471")))
+    email = "phgrosjean@sciviews.org",
+    comment = c(ORCID = "0000-0002-2694-9471")),
+  person("Guyliann", "Engels", role = c("aut"),
+    email = "guyliann.engels@umons.ac.be",
+    comment = c(ORCID = "0000-0001-9514-1014")))
 Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
 Depends:
-    R (>= 4.0.0),
+    R (>= 4.2.0),
     broom
 Imports:
     chart,
@@ -28,16 +32,17 @@ Imports:
 Suggests:
     datasets,
     parsnip,
-    covr,
+    dplyr,
     rmarkdown,
     spelling,
     testthat (>= 3.0.0)
 Remotes: 
     SciViews/chart,
     SciViews/svFlow,
     SciViews/tabularise,
-    SciViews/data.io
-License: GPL (>= 2)
+    SciViews/data.io,
+    ardata-fr/equatags
+License: MIT + file LICENSE
 URL: https://github.com/SciViews/modelit, https://www.sciviews.org/modelit/
 BugReports: https://github.com/SciViews/modelit/issues
 Roxygen: list(markdown = TRUE)

LICENSE

@@ -0,0 +1,2 @@
+YEAR: 2024
+COPYRIGHT HOLDER: Philippe Grosjean