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Issues list

Maximum depth threshold?
#46 opened Apr 28, 2023 by sejmodha
Does this have support for cram files?
#45 opened Feb 25, 2023 by smk5g5
Rank sum annotations over base quality p-values are wrong at the replicate level bug Something isn't working
#39 opened Aug 16, 2022 by priesgo
Add count of reads with overlapping indel differing from indel under scrutiny
#37 opened Aug 15, 2022 by priesgo
BED file with local purities not properly recorded in VCF header bug Something isn't working
#35 opened Aug 12, 2022 by priesgo
When DP=0 avoid adding VAF=0.0
#23 opened Feb 15, 2022 by priesgo
Add annotation on the unique mapping of reads
#6 opened Oct 14, 2021 by priesgo
Add average edit distance annotation
#5 opened Oct 14, 2021 by priesgo
Add clustered position within the read annotations
#4 opened Oct 14, 2021 by priesgo
Add strand bias annotations high priority
#3 opened Oct 14, 2021 by priesgo
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