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serocalculator 1.3.0

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@d-morrison d-morrison released this 27 Jan 00:30
v1.3.0
5fcd894

New features

  • Removed function 'get_additional_data()' (#332)

  • Updated documentation examples to include csv files (#328)

  • Added csv files for use in documentation examples (#329)

  • Added serocalculator_example() function to help locate example data files (#329)

  • Fixed a bug in computing the antibody response curve when $r=1$ (#323)

  • Added example datasets with documentation for examples and testing (#314)

  • Improved error messaging for autoplot.pop_data() (#234).

  • Clarified package installation instructions in scrub typhus vignette (#234).

  • Add as_noise_params (#228)

  • Updated simulate_xsectionalData.Rmd (linting, removing deprecated functions)
    (#289)

  • Added default value for antigen_isos argument in log_likelihood() (#286)

  • Updated enteric fever example article with upgraded code and visualizations (#290)

  • Added Methodology vignette (#284, #302, #303)

  • Added template for reporting Issues
    (from usethis::use_tidy_issue_template()) (#270)

  • Added template for pull requests
    (from https://github.com/bcgov/ssdtools) (#265)

Internal changes

  • Updated documentation to align with previous CRAN feedback (#328)

  • Updated tests to use internal testing datasets instead of external links (#328)

  • Updated test-coverage.yml GHA action to current r-lib standard (#330)

  • Change default pipe setting (#312)

  • Add test for missing strata in est.incidence.by (#227)

  • Added snapshot_value test for est.incidence() (#315)

  • Sped up lint-changed-files GitHub Action (#317)

  • Added online preview builds for PRs that change the pkgdown website (#309)

  • Added test-autoplot.pop_data test (#234)

  • initialized lintr with lintr::use_lint() (#278)

  • created unit test for df_to_array() (#276)

  • fixed dplyr::select() deprecation warning in df_to_array() (#276)

  • Added devtag to package (using devtag::use_devtag()) (#292)

  • Added @dev tag to ?df_to_array() (#292)

  • Generalized get_() and set_() methods to be general-purpose
    (no S3 class-specific methods needed yet) (#274).

  • Updated GitHub Action files and reformatted DESCRIPTION (#268)

  • Added .gitattributes file (https://git-scm.com/docs/gitattributes)
    copied from https://github.com/tidyverse/ggplot2

  • Added QR code to README.qmd

  • Added additional automated checks through
    GitHub actions,
    including:

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