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annotated.html

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+<tr id="row_0_0_11_"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classepiworld_1_1epimodels_1_1_model_s_i_r_logit.html" target="_self">ModelSIRLogit</a></td><td class="desc">Template for a Susceptible-Infected-Removed (SIR) model </td></tr>
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class_model_s_e_i_r.html

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-<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13105</div></div>
-<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6053</div></div>
+<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13110</div></div>
+<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6060</div></div>
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class_model_s_e_i_r_d.html

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-<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6053</div></div>
+<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13110</div></div>
+<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6060</div></div>
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classepiworld_1_1_model.html

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+<div class="ttc" id="aclassepiworld_1_1_model_html_a4af72bcd59626f5c6cb52fc10fc30c04"><div class="ttname"><a href="classepiworld_1_1_model.html#a4af72bcd59626f5c6cb52fc10fc30c04">epiworld::Model::name</a></div><div class="ttdeci">std::string name</div><div class="ttdoc">Name of the model.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6067</div></div>
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classepiworld_1_1epimodels_1_1_model_s_e_i_r.html

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-<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13105</div></div>
-<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6053</div></div>
+<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13110</div></div>
+<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6060</div></div>
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classepiworld_1_1epimodels_1_1_model_s_e_i_r_d.html

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-<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13105</div></div>
-<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6053</div></div>
+<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13110</div></div>
+<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6060</div></div>
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classepiworld_1_1epimodels_1_1_model_s_i_r_logit.html

@@ -74,12 +74,17 @@
 <div class="title">epiworld::epimodels::ModelSIRLogit&lt; TSeq &gt; Class Template Reference</div>  </div>
 </div><!--header-->
 <div class="contents">
+
+<p>Template for a Susceptible-Infected-Removed (SIR) model.  
+ <a href="classepiworld_1_1epimodels_1_1_model_s_i_r_logit.html#details">More...</a></p>
+
+<p><code>#include &lt;<a class="el" href="epiworld_8hpp_source.html">epiworld.hpp</a>&gt;</code></p>
 <div class="dynheader">
 Inheritance diagram for epiworld::epimodels::ModelSIRLogit&lt; TSeq &gt;:</div>
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@@ -705,7 +710,27 @@
 MixerFun&lt; EPI_DEFAULT_TSEQ &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>death_reduction_mixer</b></td></tr>
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 </table>
-<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><h3>template&lt;typename TSeq = EPI_DEFAULT_TSEQ&gt;<br />
+class epiworld::epimodels::ModelSIRLogit&lt; TSeq &gt;</h3>
+
+<p>Template for a Susceptible-Infected-Removed (SIR) model. </p>
+<p>In this model, infection and recoveru probabilities are computed using a logit model. Particularly, the probability of infection is computed as:</p>
+<p class="formulaDsp">
+<img class="formulaDsp" alt="\[ \frac{1}{1 + \exp\left(-\left(\beta_0 E_i + \sum_{i=1}^{n} \beta_i x_i\right)\right)} \]" src="form_0.png" width="171" height="30"/>
+</p>
+<p>where <img class="formulaInl" alt="$\beta_0$" src="form_1.png" width="13" height="13"/> is the exposure coefficient and <img class="formulaInl" alt="$E_i$" src="form_2.png" width="13" height="11"/> is the exposure number, <img class="formulaInl" alt="$\beta_i$" src="form_3.png" width="11" height="13"/> are the coefficients for the features <img class="formulaInl" alt="$x_i$" src="form_4.png" width="11" height="9"/> of the agents, and <img class="formulaInl" alt="$n$" src="form_5.png" width="9" height="6"/> is the number of features. The probability of recovery is computed as:</p>
+<p class="formulaDsp">
+<img class="formulaDsp" alt="\[ \frac{1}{1 + \exp\left(-\left(\sum_{i=1}^{n} \beta_i x_i\right)\right)} \]" src="form_6.png" width="129" height="30"/>
+</p>
+<p>where <img class="formulaInl" alt="$\beta_i$" src="form_3.png" width="11" height="13"/> are the coefficients for the features <img class="formulaInl" alt="$x_i$" src="form_4.png" width="11" height="9"/> of the agents, and <img class="formulaInl" alt="$n$" src="form_5.png" width="9" height="6"/> is the number of features.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">TSeq</td><td>Type of the sequence (e.g. std::vector, std::deque) </td></tr>
+  </table>
+  </dd>
+</dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
 <a id="ac2529763b3f72163846c88d2985a57fc"></a>
 <h2 class="memtitle"><span class="permalink"><a href="#ac2529763b3f72163846c88d2985a57fc">&#9670;&nbsp;</a></span>ModelSIRLogit()</h2>
 

classepiworld_1_1epimodels_1_1_model_s_i_r_logit__coll__graph.map

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diffnet_8hpp_source.html

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-<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13105</div></div>
-<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6053</div></div>
-<div class="ttc" id="aclassepiworld_1_1_model_html_ab7d63eb898445d3d30167c14ddec0c3d"><div class="ttname"><a href="classepiworld_1_1_model.html#ab7d63eb898445d3d30167c14ddec0c3d">epiworld::Model::get_n_viruses</a></div><div class="ttdeci">size_t get_n_viruses() const</div><div class="ttdoc">Number of viruses in the model.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:8553</div></div>
-<div class="ttc" id="aclassepiworld_1_1_virus_html"><div class="ttname"><a href="classepiworld_1_1_virus.html">epiworld::Virus</a></div><div class="ttdoc">Virus.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:10165</div></div>
+<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13110</div></div>
+<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6060</div></div>
+<div class="ttc" id="aclassepiworld_1_1_model_html_ab7d63eb898445d3d30167c14ddec0c3d"><div class="ttname"><a href="classepiworld_1_1_model.html#ab7d63eb898445d3d30167c14ddec0c3d">epiworld::Model::get_n_viruses</a></div><div class="ttdeci">size_t get_n_viruses() const</div><div class="ttdoc">Number of viruses in the model.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:8560</div></div>
+<div class="ttc" id="aclassepiworld_1_1_virus_html"><div class="ttname"><a href="classepiworld_1_1_virus.html">epiworld::Virus</a></div><div class="ttdoc">Virus.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:10170</div></div>
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