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[Jeff_scripts] - All scripts shared by Jeff Wang.
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[Plot.R] - R scripts used for plotting the R01 prelim figures
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[Preprocess.m] - Matlab scripts used for R01 prelim iEEG data preprocessing. Most adapted from Jeff's scripts.
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[Preprocess.xlsx] - Spreadsheets used as queue file in the preprocessing pipeline (see notes for .m scripts below).
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[Statistics.R] - R scripts for prelim statistical analyses.
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LL_Process_NLX_Files.m/LL_Process_NLX_Files_esTT.m - Uses LL_Process_Queue.xlsx in [Preprocess.xlsx] to pull nlx files and do filtering, artifact rejection, etc. and convert everything to MATLAB formats.
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LL_Fix_Trigs.m - splits triggers into sham vs TMS trials, does channel rejection, etc. Uses LL_FixTrigs_Queue.xlsx in [Preprocess.xlsx] to queue up files.
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LL_epoch_trials.m - does detrending and epochs the time trace based on trigger times. Uses LL_Epoch_Queue.xlsx in [Preprocess.xlsx].
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LL_epoch_stats.m - nonparametric clustering to determine significant iTEPs. Uses xl_Epoch_Queue.xlsx in [Preprocess.xlsx].
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xl_get_iTEPtable.m/xl_get_CCEPtable.m - Export preprocessed iEEG data into .csv format for statistical analyses.