need to build the sphinx doc because the index.rst references the aut…

…ogen files; add conda action to install environment.yml

.github/workflows/ci.yml

@@ -24,18 +24,15 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-    - name: Set up Python 3.12
-      uses: actions/setup-python@v2
+    - uses: conda-incubator/setup-miniconda@v3
       with:
-        python-version: 3.12
-    - name: Install python dependencies
-      run: |
-        pip install --upgrade pip
-        pip install -r requirements.txt
+        miniconda-version: "24.5.0"
+        activate-environment: base 
+        environment-file: environment.yml
+        python-version: "3.12"
+        auto-activate-base: true
     - name: "Build HTML docs"
       run: |
-        echo "SPHINX_LINKCHECK $SPHINX_LINKCHECK"
         make -C docs html linkcheck
       env:
         SPHINXOPTS: -nW --keep-going
-        SPHINX_LINKCHECK: on

docs/conf.py

@@ -69,7 +69,7 @@
 ipython_mplbackend = ""
 
 copybutton_selector = "div:not(.no-copy)>div.highlight pre"
-copybutton_prompt_text = ">>> |\.\.\. |\$ |In \[\d*\]: | {2,5}\.\.\.: | {5,8}: "
+copybutton_prompt_text = ">>> |... |$ |In [d*]: | {2,5}...: | {5,8}: "
 copybutton_prompt_is_regexp = True
 
 todo_include_todos = True
@@ -412,18 +412,10 @@ def setup(app):
 gallery_src_relative_dir = (
     "gallery"  # relative path of the gallery src wrt. sphinx src
 )
-# debug
-print("SPHINX_LINKCHECK", os.getenv("SPHINX_LINKCHECK"))
-
-# We don't want to build the gallery if sphinx linkcheck is only used
-if os.getenv("SPHINX_LINKCHECK"):
-    sphinx_src_autogen_dirs = []
-else:
-    sphinx_src_autogen_dirs = ["sections/writing_workflows_with_workgraph/autogen"]
-
-
 
 # we mimik the structure in the sphinx src directory in the gallery src directory
+sphinx_src_autogen_dirs = ["sections/writing_workflows_with_workgraph/autogen"]
+
 gallery_src_dirs = [
     os.path.join(gallery_src_relative_dir, autogen_dir)
     for autogen_dir in sphinx_src_autogen_dirs