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number of deletion is not equal to that counted from pileup file #102

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Huanle opened this issue Jan 21, 2020 · 0 comments
Open

number of deletion is not equal to that counted from pileup file #102

Huanle opened this issue Jan 21, 2020 · 0 comments

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@Huanle
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Huanle commented Jan 21, 2020

Hi @alimanfoo ,
In the attached example.
The number of deletions counted from pileup file is 128, but in the pysamstats results, it is 5.
can you explain why?

Thanks a lot.

2244.40.pileup.txt
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@Huanle