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26 Open 74 Closed
26 Open 74 Closed
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Issues list

AttributeError: module 'pysam.libcalignmentfile' has no attribute 'IteratorColumnAll'
#157 opened Dec 15, 2023 by mmnascimento
where to download pysamstats license?
#132 opened Dec 31, 2021 by N-damo
1
Replacing assertions with explicit error messages
#127 opened Aug 12, 2021 by fedarko
Fix for pysam 0.16
#125 opened Jul 2, 2021 by alimanfoo
2
compatibility with python 3.9
#122 opened Jul 1, 2021 by gtonkinhill
2
Pysamstats: supplementary alignments
#116 opened Feb 9, 2021 by martina811
1
RuntimeWarning: pysam.libcalignedsegment.PileupColumn size changed, may indicate binary incompatibility. Expected 72 from C header, got 88 from PyObject
#112 opened Nov 8, 2020 by Nilad
3
[How to use] Can pysamstats accept multiple coordinate parameters at the same time?
#108 opened Aug 28, 2020 by b-niu
number of deletion is not equal to that counted from pileup file
#102 opened Jan 21, 2020 by Huanle
ImportError: No module named opt
#95 opened Nov 13, 2018 by lybird300
3
pysam.libchtslib.HTSFile has the wrong size
#94 opened Oct 4, 2018 by MeHelmy
6
Carriage return appended to lines
#92 opened Jul 30, 2018 by dariober
1
pysamstats/opt.pyx
#89 opened Jun 26, 2018 by worker000000
1
v1.1 release plan
#85 opened May 11, 2018 by alimanfoo
5 of 6 tasks
v1.1
4
error of pysamstats while using python2.7.14
#83 opened Apr 27, 2018 by douym
5
Consensus variation stats for paired end?
#60 opened Jan 18, 2017 by astewart-twist
5
pysamstats Docker image
#58 opened Nov 23, 2016 by fjukstad
1
pysam version 0.9.1.4 causes an error on install.
#56 opened Aug 23, 2016 by owainkenwayucl
3
Add 'positions_softclipped' to stat_variation ?
#47 opened Dec 16, 2015 by astewart-twist
pysam.cfaidx.FastqProxy has the wrong size, try recompiling
#45 opened Sep 21, 2015 by pontikos
12
combined pileup stats enhancement
#37 opened Oct 22, 2014 by alimanfoo
add counts of secondary alignments enhancement
#23 opened Feb 5, 2014 by alimanfoo
2
binned variation stats enhancement
#9 opened Apr 17, 2013 by alimanfoo
2
base quality sum enhancement
#7 opened Jan 26, 2013 by alimanfoo
output stats against given intervals enhancement
#4 opened Jan 12, 2013 by alimanfoo
2
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