Add support for Python 3.13

* Upgrade pre-commit dependencies
* Upgrade Python requirements

.github/workflows/test.yml

@@ -9,14 +9,15 @@ on:
 jobs:
   test:
     name: "Test Python ${{ matrix.python-version }}"
-    runs-on: "ubuntu-22.04"
+    runs-on: "ubuntu-24.04"
     strategy:
       matrix:
         python-version: [
           "3.9",
           "3.10",
           "3.11",
           "3.12",
+          "3.13",
         ]
     steps:
       - name: "Check out repository"
@@ -32,10 +33,10 @@ jobs:
       - name: "Install tox"
         run: |
           python -m pip install --upgrade pip
-          pip install tox tox-gh-actions
+          pip install tox
       - name: "Run tox"
         run: |
-          tox -- --cov fixity --cov-config .coveragerc --cov-report xml:coverage.xml
+          tox -e py3 -- --cov fixity --cov-config .coveragerc --cov-report xml:coverage.xml
       - name: "Upload coverage report"
         if: github.repository == 'artefactual/fixity'
         uses: "codecov/codecov-action@v4"
@@ -47,14 +48,14 @@ jobs:
           CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
   lint:
     name: "Lint"
-    runs-on: "ubuntu-22.04"
+    runs-on: "ubuntu-24.04"
     steps:
       - name: "Check out repository"
         uses: "actions/checkout@v4"
       - name: "Set up Python"
         uses: "actions/setup-python@v5"
         with:
-          python-version: "3.12"
+          python-version: "3.x"
           cache-dependency-path: |
             requirements.txt
             requirements-dev.txt

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.8.5
+  rev: v0.9.1
   hooks:
   - id: ruff
     args: [--fix, --exit-non-zero-on-fix]

pyproject.toml

@@ -38,6 +38,7 @@ classifiers = [
   "Programming Language :: Python :: 3.10",
   "Programming Language :: Python :: 3.11",
   "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: 3.13",
 ]
 authors = [
   {name = "Artefactual Systems Inc.", email = "info@artefactual.com"}
@@ -106,14 +107,7 @@ omit = [
 [tool.tox]
 legacy_tox_ini = """
     [tox]
-    envlist = py{39,310,311,312}, linting
-
-    [gh-actions]
-    python =
-        3.9: py39
-        3.10: py310
-        3.11: py311
-        3.12: py312
+    envlist = py3{9,10,11,12,13}, linting
 
     [testenv]
     skip_install = true

requirements-dev.txt

@@ -46,9 +46,9 @@ pytest-cov==6.0.0
     # via fixity (pyproject.toml)
 requests==2.32.3
     # via fixity (pyproject.toml)
-ruff==0.8.5
+ruff==0.9.1
     # via fixity (pyproject.toml)
-sqlalchemy==2.0.36
+sqlalchemy==2.0.37
     # via fixity (pyproject.toml)
 tomli==2.2.1
     # via
@@ -68,5 +68,5 @@ zipp==3.21.0
 # The following packages are considered to be unsafe in a requirements file:
 pip==24.3.1
     # via pip-tools
-setuptools==75.6.0
+setuptools==75.8.0
     # via pip-tools

requirements.txt

@@ -14,7 +14,7 @@ idna==3.10
     # via requests
 requests==2.32.3
     # via fixity (pyproject.toml)
-sqlalchemy==2.0.36
+sqlalchemy==2.0.37
     # via fixity (pyproject.toml)
 typing-extensions==4.12.2
     # via sqlalchemy

tests/test_fixity.py

@@ -88,18 +88,21 @@ def test_scan(
     ]
 
 
+@mock.patch("time.time_ns")
 @mock.patch("time.time")
 @mock.patch("requests.get")
 def test_scan_if_timestamps_argument_is_passed(
     _get: mock.Mock,
     time: mock.Mock,
+    time_ns: mock.Mock,
     environment: None,
     mock_check_fixity: list[mock.Mock],
 ) -> None:
     _get.side_effect = mock_check_fixity
     aip_id = uuid.uuid4()
     timestamp = 1514775600
     time.return_value = timestamp
+    time_ns.return_value = timestamp * (10**9)
     stream = io.StringIO()
 
     response = fixity.main(["scan", str(aip_id), "--timestamps"], stream=stream)