added calls emits to cnvkit subworkflow

asp8200 · May 11, 2024 · bb0ec8d · bb0ec8d
1 parent 933cd9c
commit bb0ec8d
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/subworkflows/local/bam_variant_calling_cnvkit/main.nf b/subworkflows/local/bam_variant_calling_cnvkit/main.nf
@@ -39,5 +39,7 @@ workflow BAM_VARIANT_CALLING_CNVKIT {
     versions = versions.mix(CNVKIT_GENEMETRICS.out.versions)
 
     emit:
-    versions // channel: [ versions.yml ]
+    cnv_calls_raw    = CNVKIT_CALL.out.cns      // channel: [ meta, cns ]
+    cnv_calls_export = CNVKIT_EXPORT.out.output // channel: [ meta, export_format ]
+    versions                                    // channel: [ versions.yml ]
 }