Merge pull request nf-core#1570 from nf-core/maxulysse-patch-2

Remove duplication

CHANGELOG.md

@@ -34,6 +34,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [#1547](https://github.com/nf-core/sarek/pull/1547) - Correct typo in help text in nextflow_schema.json
 - [#1556](https://github.com/nf-core/sarek/pull/1556) - Fix display of some commands in `docs/usage.md`
 - [#1563](https://github.com/nf-core/sarek/pull/1563) - Fix `vep_cache_path_full` so that `--refseq/--merged` will work for ENSEMBLVEP
+- [#1570](https://github.com/nf-core/sarek/pull/1570) - Remove duplicated notes in FASTQC output docs
 
 ### Removed
 

docs/output.md

@@ -924,18 +924,17 @@ The plots display:
 <details markdown="1">
 <summary>Output files for all samples</summary>
 
-:::note
-The FastQC plots displayed in the MultiQC report shows _untrimmed_ reads. They may contain adapter sequence and potentially regions with low quality.
-:::
 **Output directory: `{outdir}/reports/fastqc/<sample-lane>`**
 
 - `<sample-lane_1>_fastqc.html` and `<sample-lane_2>_fastqc.html`
   - [FastQC](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) report containing quality metrics for your untrimmed raw FastQ files
 - `<sample-lane_1>_fastqc.zip` and `<sample-lane_2>_fastqc.zip`
   - Zip archive containing the [FastQC](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) report, tab-delimited data file and plot images
 
-> **NB:** The FastQC plots displayed in the [MultiQC](https://multiqc.info/) report shows _untrimmed_ reads.
-> They may contain adapter sequence and potentially regions with low quality.
+:::note
+The FastQC plots displayed in the MultiQC report shows _untrimmed_ reads.
+They may contain adapter sequence and potentially regions with low quality.
+:::
 
 </details>