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Vivek/7th jan bug fixes #162

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@vivek-athina vivek-athina commented Jan 10, 2025

Summary by CodeRabbit

Release Notes v1.7.7

  • New Features

    • Enhanced retrieval methods for Chroma, Pinecone, Qdrant, and Weaviate with more flexible query generation
    • Added dynamic JSON error debugging for API calls
  • Improvements

    • Updated vector retrieval classes to support more dynamic query templating
    • Improved error handling and result structure for retrieval operations
  • Dependency Updates

    • Updated Pinecone vector store library version
    • Removed direct Pinecone and Qdrant client dependencies
  • Bug Fixes

    • Resolved issues with query text generation and retrieval processes

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coderabbitai bot commented Jan 10, 2025

Walkthrough

The pull request introduces significant changes across multiple retrieval and API-related files in the Athina project. The primary modifications involve renaming input_column to user_query in retrieval classes, enhancing query handling with Jinja2 templating, and improving error reporting. The API handling in api.py has been streamlined with a new JSON debugging function and modified input data processing. The project version has been bumped to 1.7.7, with updates to Pinecone-related dependencies.

Changes

File Change Summary
athina/steps/api.py - Removed prepare_input_data function
- Added debug_json_structure for JSON error analysis
- Modified URL and input data handling in execute_async
athina/steps/chroma_retrieval.py - Replaced input_column with user_query
- Added Jinja2 query rendering
- Simplified query and response handling
athina/steps/pinecone_retrieval.py - Renamed input_column to user_query
- Added optional text_key attribute
- Enhanced retrieval with content and score
athina/steps/qdrant_retrieval.py - Renamed input_column to user_query
- Updated error message
- Modified result structure to include scores
athina/steps/weaviate_retrieval.py - Replaced input_column with user_query
- Updated docstrings
- Enhanced result processing with scores
pyproject.toml - Bumped version to 1.7.7
- Removed pinecone-client and qdrant-client
- Updated llama-index-vector-stores-pinecone

Sequence Diagram

sequenceDiagram
    participant User
    participant RetrievalClass
    participant VectorStore
    participant Jinja2

    User->>RetrievalClass: Execute with input_data
    RetrievalClass->>Jinja2: Render user_query
    Jinja2-->>RetrievalClass: Rendered query_text
    RetrievalClass->>VectorStore: Query with rendered text
    VectorStore-->>RetrievalClass: Retrieve results with scores
    RetrievalClass-->>User: Return results
Loading

Poem

🐰 Retrieval's dance, a template's grace,
Query morphs with Jinja's embrace
Scores now sing, errors take flight
CodeRabbit's magic, shining bright!
Evolution's hop, smooth and light 🌟

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Actionable comments posted: 2

🔭 Outside diff range comments (1)
athina/steps/api.py (1)

Line range hint 83-179: Fix return type annotations to match StepResult

The pipeline indicates type mismatches between the declared return type Dict[str, Any] and actual return type StepResult.

-    async def execute_async(self, input_data: Any) -> Union[Dict[str, Any], None]:
+    async def execute_async(self, input_data: Any) -> StepResult:

Please also update the synchronous execute method:

-    def execute(self, input_data: Any) -> Union[Dict[str, Any], None]:
+    def execute(self, input_data: Any) -> StepResult:
🧰 Tools
🪛 Ruff (0.8.2)

145-145: f-string without any placeholders

Remove extraneous f prefix

(F541)

🧹 Nitpick comments (2)
athina/steps/weaviate_retrieval.py (1)

6-6: Remove unused import.

The List type from typing is imported but never used.

Apply this diff to fix the issue:

-from typing import Union, Dict, Any, List
+from typing import Union, Dict, Any
🧰 Tools
🪛 Ruff (0.8.2)

6-6: typing.List imported but unused

Remove unused import: typing.List

(F401)

athina/steps/api.py (1)

26-37: Consider enhancing JSON debug information

The debug function provides basic error context, but could be more helpful by including:

  • Column position of the error
  • A few lines before and after the problematic line for context
  • Suggestions for common JSON syntax errors
 def debug_json_structure(body_str: str, error: json.JSONDecodeError) -> dict:
     """Analyze JSON structure and identify problematic keys."""
     lines = body_str.split("\n")
     error_line_num = error.lineno - 1
+    context_lines = 2  # Number of lines before and after for context
+    start_line = max(0, error_line_num - context_lines)
+    end_line = min(len(lines), error_line_num + context_lines + 1)
 
     return {
         "original_body": body_str,
         "problematic_line": (
             lines[error_line_num] if error_line_num < len(lines) else None
         ),
+        "error_position": error.pos,
+        "context": {
+            "lines": lines[start_line:end_line],
+            "line_numbers": list(range(start_line + 1, end_line + 1))
+        }
     }
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between b3c7b2f and 096a847.

📒 Files selected for processing (6)
  • athina/steps/api.py (2 hunks)
  • athina/steps/chroma_retrieval.py (3 hunks)
  • athina/steps/pinecone_retrieval.py (4 hunks)
  • athina/steps/qdrant_retrieval.py (3 hunks)
  • athina/steps/weaviate_retrieval.py (5 hunks)
  • pyproject.toml (2 hunks)
🧰 Additional context used
🪛 Ruff (0.8.2)
athina/steps/api.py

145-145: f-string without any placeholders

Remove extraneous f prefix

(F541)

athina/steps/weaviate_retrieval.py

6-6: typing.List imported but unused

Remove unused import: typing.List

(F401)

🪛 GitHub Actions: Python Linter
athina/steps/api.py

[error] 83-179: Multiple return type mismatches between StepResult and expected dict types

🔇 Additional comments (10)
athina/steps/qdrant_retrieval.py (2)

23-23: LGTM! Consistent attribute renaming.

The renaming from input_column to user_query improves clarity and aligns with the changes across other retrieval classes.

Also applies to: 31-31


87-93: LGTM! Enhanced result structure.

The updated result structure now includes both text content and similarity scores, providing more comprehensive information for downstream processing.

athina/steps/chroma_retrieval.py (2)

29-29: LGTM! Consistent attribute renaming.

The renaming from input_column to user_query maintains consistency with other retrieval classes.

Also applies to: 39-39


106-111: ⚠️ Potential issue

Remove duplicate return statement.

There are two consecutive return statements, which makes the second one unreachable.

Apply this diff to fix the issue:

            return self._create_step_result(
                status="success",
                data=result,
                start_time=start_time,
            )
-            return self._create_step_result(
-                status="success",
-                data=result,
-                start_time=start_time,
-            )

Likely invalid or redundant comment.

athina/steps/pinecone_retrieval.py (2)

36-36: LGTM! Improved vector store initialization.

The addition of text_key parameter and the conditional initialization of vector store arguments enhances flexibility while maintaining backward compatibility.

Also applies to: 43-59


100-111: ⚠️ Potential issue

Remove duplicate return statement.

Similar to ChromaRetrieval, there are two consecutive return statements.

Apply this diff to fix the issue:

            return self._create_step_result(
                status="success", data=result, start_time=start_time
            )
-            return self._create_step_result(
-                status="success",
-                data=result,
-                start_time=start_time,
-            )

Likely invalid or redundant comment.

athina/steps/weaviate_retrieval.py (2)

81-95: LGTM! Consistent metadata handling.

The addition of return_metadata=MetadataQuery.full() across all search types ensures consistent metadata retrieval.


102-114: LGTM! Improved score extraction.

The score extraction logic now handles both certainty and score metadata fields appropriately based on the search type.

athina/steps/api.py (1)

122-126: LGTM! Clean request preparation with proper template handling

The code properly handles the preparation of request components using Jinja2 templating.

pyproject.toml (1)

3-3: LGTM! Version bump aligns with bug fixes

The version increment from 1.7.6 to 1.7.7 is appropriate for bug fixes.

Comment on lines +133 to +153
try:
json_body = (
json.loads(prepared_body, strict=False)
if prepared_body
else None
)
except json.JSONDecodeError as e:
debug_info = debug_json_structure(prepared_body, e)
return self._create_step_result(
status="error",
data=json.dumps(
{
"message": f"Failed to parse request body as JSON",
"error_type": "JSONDecodeError",
"error_details": str(e),
"debug_info": debug_info,
},
indent=2,
),
start_time=start_time,
)
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🛠️ Refactor suggestion

Fix f-string and improve error message structure

The error handling is comprehensive, but there are a few improvements needed:

  1. Remove unnecessary f-string prefix (line 145)
  2. Consider structuring error messages consistently across the class
-                                    "message": f"Failed to parse request body as JSON",
+                                    "message": "Failed to parse request body as JSON",
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
try:
json_body = (
json.loads(prepared_body, strict=False)
if prepared_body
else None
)
except json.JSONDecodeError as e:
debug_info = debug_json_structure(prepared_body, e)
return self._create_step_result(
status="error",
data=json.dumps(
{
"message": f"Failed to parse request body as JSON",
"error_type": "JSONDecodeError",
"error_details": str(e),
"debug_info": debug_info,
},
indent=2,
),
start_time=start_time,
)
try:
json_body = (
json.loads(prepared_body, strict=False)
if prepared_body
else None
)
except json.JSONDecodeError as e:
debug_info = debug_json_structure(prepared_body, e)
return self._create_step_result(
status="error",
data=json.dumps(
{
"message": "Failed to parse request body as JSON",
"error_type": "JSONDecodeError",
"error_details": str(e),
"debug_info": debug_info,
},
indent=2,
),
start_time=start_time,
)
🧰 Tools
🪛 Ruff (0.8.2)

145-145: f-string without any placeholders

Remove extraneous f prefix

(F541)

@@ -37,7 +35,7 @@ textdistance = "^4.6.3"
textstat = "^0.7.4"
chromadb-client = "^0.5.20"
llama-index = "^0.11.0"
llama-index-vector-stores-pinecone = "^0.2.0"
llama-index-vector-stores-pinecone = "^0.3.1"
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💡 Codebase verification

Direct qdrant-client dependency is required

The qdrant-client package cannot be removed as it's actively used in athina/steps/qdrant_retrieval.py. The QdrantRetrieval class directly instantiates qdrant_client.QdrantClient for vector store operations.

  • athina/steps/qdrant_retrieval.py: Uses qdrant_client.QdrantClient for core functionality
🔗 Analysis chain

Verify dependency changes impact

The update to llama-index-vector-stores-pinecone looks good, but please verify:

  1. That removing direct pinecone-client and qdrant-client dependencies doesn't break any direct usage
  2. That the new version of llama-index-vector-stores-pinecone is compatible with your usage

Run this script to check for direct usage of removed packages:

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Search for direct imports of removed packages
echo "Checking for direct pinecone-client usage..."
rg "import pinecone" || rg "from pinecone"

echo "Checking for direct qdrant-client usage..."
rg "import qdrant" || rg "from qdrant"

Length of output: 312


Script:

#!/bin/bash
# Check content and usage of qdrant_retrieval.py
echo "Content of qdrant_retrieval.py:"
cat athina/steps/qdrant_retrieval.py

echo -e "\nChecking for references to qdrant_retrieval.py:"
rg -l "qdrant_retrieval"

Length of output: 3741

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