NEWS and Bump Version

DESCRIPTION

@@ -8,8 +8,8 @@ Description: The dada2 package infers exact amplicon sequence variants (ASVs) fr
     removing substitution and chimera errors. Taxonomic classification is available
     via a native implementation of the RDP naive Bayesian classifier, and species-level
     assignment to 16S rRNA gene fragments by exact matching.
-Version: 1.9.2
-Date: 2018-09-04
+Version: 1.9.3
+Date: 2018-10-10
 Maintainer: Benjamin Callahan <benjamin.j.callahan@gmail.com>
 Author: Benjamin Callahan <benjamin.j.callahan@gmail.com>, Paul McMurdie, Susan Holmes
 License: LGPL-3

NEWS

@@ -1,3 +1,29 @@
+CHANGES IN VERSION 1.9.2
+-----------------------
+
+NEW FEATURES
+
+    o PacBio CCS reads up to 3 kilobases are now supported. See also PacBioErrfun, the new and recommended error-estimation function for PacBio CCS data.
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+    o primer.fwd has been replaced by orient.fwd in the filterAndTrim function. This option consistently orients mixed-orientation single-end or paired-end reads based on matching the provided sequence fragment to the start or end of each read (or paired read). Intended for use with mixed-orientation reads that included sequenced primers. If primers aren't included in the amplicons, an external re-orientation solution remains preferable.
+
+    o trimRight has been added to the filterAndTrim function. This removes the specified number of bases from the end ("right" side) of each read.
+
+BUG FIXES
+
+    o collapseNoMismatch now collapses identical sequences as well (previous behavior is togglable).
+
+CHANGES IN VERSION 1.9.1
+-----------------------
+
+BUG FIXES
+
+    o mergePairs now gracefully handles cases when zero reads succesfully merge.
+
+    o plotQualityProfile now works correclty when given a directory containing fastq files.
+
 CHANGES IN VERSION 1.7.8
 -----------------------