Orcestra ICB Data Manager

Warning

This project has been archived and is no longer maintained.

The functionality has been implemented in the orcestra-downloader python package.

Please refer to it's repository for downloading icb data.

This project provides a command-line interface (CLI) to manage and interact with a collection of ICB dataset records. The CLI allows you to list available datasets, download all datasets, or download a specific dataset by name.

Demo of downloading all ICB Dataset from Orcestra

Setup

Clone the repository:

git clone https://github.com/jjjermiah/orcestra_icb.git

Ensure you have pixi installed.

Then run:

pixi install

Usage

Listing Datasets

To list all available datasets, run:

pixi run icb list

Downloading Datasets

To download all datasets, run:

pixi run icb download_all --output_dir <output_directory>

To download a specific dataset, run:

pixi run icb download <dataset_name> --output_dir <output_directory>