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Singlecell new upload#1246

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Commits on Oct 29, 2024

• Initial setup for scRNAseq dedicated upload

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Commits on Nov 15, 2024

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Commits on Nov 17, 2024

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Commits on Nov 26, 2024

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Commits on Nov 27, 2024

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Commits on Nov 28, 2024

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Commits on Nov 29, 2024

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• splitmap downsample for scRNAseq

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• new options at upload

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• new options at upload

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• new options at upload

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Commits on Dec 2, 2024

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Commits on Dec 3, 2024

• adjust parameters; add filters

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• fix axis

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Commits on Dec 6, 2024

• adding WRS test for scRNAseq

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Commits on Dec 7, 2024

• add WRS test

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Commits on Dec 9, 2024

• fix bugs upload

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Commits on Dec 11, 2024

• refactoring to avoid mem issue

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Commits on Dec 12, 2024

• splitby phenotype default in cluster samples

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Commits on Dec 13, 2024

• wip

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• remove shinyreactive, improve speed and efficiency

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Commits on Dec 14, 2024

• add sc_settings

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Commits on Dec 20, 2024

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Commits on Jan 5, 2025

• temp disable sc_settings_list & make available wrs for all datatypes

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Commits on Jan 7, 2025

• add sc parameters list

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• add sc parameters list

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Commits on Jan 8, 2025

• rm celltype deconv method for scRNAseq

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Commits on Jan 9, 2025

• add Compute supercells options

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• add Compute supercells options

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• polishing code

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• polishing code

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Commits on Jan 10, 2025

• polish

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Commits on Jan 13, 2025

• computesupercells as boolean

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• polishing

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• azimuth-celltypes-always

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Commits on Jan 14, 2025

• adjust nFeatureRNA filters

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• remove GSVA

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Commits on Jan 16, 2025

• add option to regress covs

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• remove ttest.welch as default

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• add covariates to sc_compute_settings

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• do.supercells as a boolean

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Commits on Jan 17, 2025

• quantile-defined cutoffs for nFeature_RNA

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Commits on Jan 21, 2025

• add number of features and cells

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