add uv.lock #23
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| name: CI | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: | |
| - 3.9 | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: true | |
| - name: Setup conda conda. | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| conda-channels: conda-forge,bioconda | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v3 | |
| with: | |
| # Install a specific version of uv and enable caching. | |
| version: "0.5.16" | |
| enable-cache: true | |
| - name: Set up Python | |
| run: uv python install ${{ matrix.python-version }} | |
| - name: Install the project | |
| run: uv sync --all-extras --dev | |
| - name: Run tests | |
| run: uv run pytest | |
| - name: Check formatting | |
| run: uv run ruff format --check | |
| - name: Lint | |
| run: uv run ruff check |