New prefix: PharmGKB Variant (#1368)

biopragmatics · Jan 19, 2025 · 3bd2d2b · 3bd2d2b
1 parent e591cfc
commit 3bd2d2b
Showing 1 changed file with 20 additions and 0 deletions.
diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json
@@ -90330,6 +90330,7 @@
       "obsolete": false,
       "prefix": "2651"
     },
+    "license": "CC-BY-SA-4.0",
     "mappings": {
       "biocontext": "PHARMGKB.DISEASE",
       "biolink": "PHARMGKB.DISEASE",
@@ -90417,6 +90418,7 @@
       "obsolete": false,
       "prefix": "2652"
     },
+    "license": "CC-BY-SA-4.0",
     "mappings": {
       "biocontext": "PHARMGKB.DRUG",
       "biolink": "PHARMGKB.DRUG",
@@ -90509,6 +90511,7 @@
       "prefix": "PharmGKB",
       "uri_format": "https://www.pharmgkb.org/do/serve?objId=$1"
     },
+    "license": "CC-BY-SA-4.0",
     "mappings": {
       "biocontext": "PHARMGKB.GENE",
       "biolink": "PHARMGKB.GENE",
@@ -90613,6 +90616,7 @@
       "obsolete": false,
       "prefix": "2650"
     },
+    "license": "CC-BY-SA-4.0",
     "mappings": {
       "biocontext": "PHARMGKB.PATHWAYS",
       "biolink": "PHARMGKB.PATHWAYS",
@@ -90692,6 +90696,22 @@
       "uri_format": "https://www.pharmgkb.org/accession/$1"
     }
   },
+  "pharmgkb.variant": {
+    "contributor": {
+      "email": "cthoyt@gmail.com",
+      "github": "cthoyt",
+      "name": "Charles Tapley Hoyt",
+      "orcid": "0000-0003-4423-4370"
+    },
+    "description": "SNPs and other variants that can be mapped to dbSNP.",
+    "example": "PA166156302",
+    "github_request_issue": 1368,
+    "homepage": "https://www.pharmgkb.org",
+    "license": "CC-BY-SA-4.0",
+    "name": "PharmGKB Variant",
+    "pattern": "^PA\\d+$",
+    "uri_format": "https://www.pharmgkb.org/variant/$1"
+  },
   "pharmvar": {
     "contact": {
       "email": "agaedigk@cmh.edu",