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Add prefix: absd (#1362)
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This pull request curates a new prefix `absd`, which is a standardized
collection of non-redundant antibody sequences. This PR adds necessary
metadata to `bioregistry.json` and adds the curated paper to
`currated_papers.tsv`

https://pubmed.ncbi.nlm.nih.gov/39703430/

---------

Co-authored-by: Ben Gyori <ben.gyori@gmail.com>
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nalikapalayoor and bgyori authored Jan 14, 2025
1 parent db524ad commit 764c634
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35 changes: 35 additions & 0 deletions src/bioregistry/data/bioregistry.json
Original file line number Diff line number Diff line change
Expand Up @@ -661,6 +661,41 @@
"database": "Q111134507"
}
},
"absd": {
"contact": {
"email": "nicolas.maillet@pasteur.fr",
"name": "Nicolas Maillet",
"orcid": "0000-0003-1611-5243"
},
"contributor": {
"email": "palayoor.n@northeastern.edu",
"github": "nalikapalayoor",
"name": "Nalika Palayoor",
"orcid": "0009-0008-8406-631X"
},
"description": "The AntiBody Sequence Database is a public dataset for antibody sequence data. It provides unique identifiers for antibody sequences, including both immunoglobulin and single-chain variable fragment sequences. These are are critical for immunological studies, and allows users to search and retrieve antibody sequences based on sequence similarity and specificity, and other biological properties.",
"example": "81d0ea69a9ab134f6ba68314e982171a367d3ab739c85c5ba49701dd02170ed3",
"github_request_issue": 1362,
"homepage": "https://absd.pasteur.cloud",
"name": "AntiBody Sequence Database",
"pattern": "^[a-f0-9]{64}$",
"publications": [
{
"doi": "10.1093/nargab/lqae171",
"pmc": "PMC11655285",
"pubmed": "39703430",
"title": "AntiBody Sequence Database",
"year": 2024
}
],
"reviewer": {
"email": "b.gyori@northeastern.edu",
"github": "bgyori",
"name": "Benjamin M. Gyori",
"orcid": "0000-0001-9439-5346"
},
"uri_format": "https://absd.pasteur.cloud/antibody/$1"
},
"ac": {
"contributor": {
"email": "cthoyt@gmail.com",
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1 change: 1 addition & 0 deletions src/bioregistry/data/curated_papers.tsv
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Expand Up @@ -136,5 +136,6 @@ pubmed relevant orcid date_curated relevancy_type pr_added notes
39687250 0 0009-0008-8406-631X 2025-01-07 irrelevant_other 1351
39687760 0 0009-0008-8406-631X 2025-01-10 non_resource_paper 1351
39703015 0 0009-0008-8406-631X 2025-01-07 irrelevant_other 1351
39703430 1 0009-0008-8406-631X 2025-1-10 new_prefix 1362
39719062 0 0009-0008-8406-631X 2025-01-07 not_identifiers_resource 1351
39732706 0 0009-0008-8406-631X 2025-01-10 not_identifiers_resource 1351

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