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Update prefix: seed --> seed.subsystem #1365

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merged 7 commits into from
Jan 18, 2025

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nalikapalayoor
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@nalikapalayoor nalikapalayoor commented Jan 17, 2025

After reviewing the current prefixes associated with The Seed, we decided to update the name of the 'seed' prefix to be 'seed.subsystems', and have 'seed' be a synonym for it instead. This PR makes this update, and also updates the 'uri_format' for 'seed.subsystems' to be a working url, as the old one seems to be outdated.

Fixes #1339

@bgyori bgyori changed the title Update prefix: seed --> seed.subsystems Update prefix: seed --> seed.subsystem Jan 17, 2025
@bgyori bgyori marked this pull request as ready for review January 18, 2025 15:14
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codecov bot commented Jan 18, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 46.27%. Comparing base (8950e70) to head (62e6ec2).
Report is 270 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1365      +/-   ##
==========================================
+ Coverage   42.51%   46.27%   +3.75%     
==========================================
  Files         117      118       +1     
  Lines        8327     8301      -26     
  Branches     1963     1357     -606     
==========================================
+ Hits         3540     3841     +301     
+ Misses       4582     4275     -307     
+ Partials      205      185      -20     

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@bgyori
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bgyori commented Jan 18, 2025

The diff looks weird because of the change in alphabetical order between prefixes but to summarize, the changes are:

  • Rename seed to seed.subsystem
  • Change the existing synonym from seed.subsystem to seed
  • Add an override uri_format

@bgyori bgyori merged commit 32b809f into biopragmatics:main Jan 18, 2025
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Update SEED Subsystem
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