implementing ignoring parameters

biosimulators · May 3, 2021 · 4e0daff · 4e0daff
1 parent 98d069e
commit 4e0daff
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/biosimulators_cobrapy/core.py b/biosimulators_cobrapy/core.py
@@ -133,7 +133,7 @@ def exec_sed_task(task, variables, log=None):
             except NotImplementedError as exception:
                 if (
                     ALGORITHM_SUBSTITUTION_POLICY_LEVELS[algorithm_substitution_policy]
-                    > ALGORITHM_SUBSTITUTION_POLICY_LEVELS[AlgorithmSubstitutionPolicy.SAME_METHOD]
+                    > ALGORITHM_SUBSTITUTION_POLICY_LEVELS[AlgorithmSubstitutionPolicy.NONE]
                 ):
                     warn('Unsuported algorithm parameter `{}` was ignored:\n  {}'.format(
                         method_arg_change.kisao_id, str(exception).replace('\n', '\n  ')),
@@ -143,7 +143,7 @@ def exec_sed_task(task, variables, log=None):
             except ValueError as exception:
                 if (
                     ALGORITHM_SUBSTITUTION_POLICY_LEVELS[algorithm_substitution_policy]
-                    > ALGORITHM_SUBSTITUTION_POLICY_LEVELS[AlgorithmSubstitutionPolicy.SAME_METHOD]
+                    > ALGORITHM_SUBSTITUTION_POLICY_LEVELS[AlgorithmSubstitutionPolicy.NONE]
                 ):
                     warn('Unsuported value `{}` for algorithm parameter `{}` was ignored:\n  {}'.format(
                         method_arg_change.new_value, method_arg_change.kisao_id, str(exception).replace('\n', '\n  ')),

diff --git a/tests/test_core_main.py b/tests/test_core_main.py
@@ -219,7 +219,7 @@ def test_exec_sed_task_error_handling(self):
                 kisao_id='KISAO_0000437',
                 changes=[sedml_data_model.AlgorithmParameterChange(kisao_id='KISAO_0000553', new_value='GLPK2')]
             ))
-        with mock.patch.dict('os.environ', {'ALGORITHM_SUBSTITUTION_POLICY': 'SAME_METHOD'}):
+        with mock.patch.dict('os.environ', {'ALGORITHM_SUBSTITUTION_POLICY': 'NONE'}):
             with self.assertRaisesRegex(CombineArchiveExecutionError, 'is not a valid'):
                 core.exec_sedml_docs_in_combine_archive(archive_filename, self.dirname)
 
@@ -232,7 +232,7 @@ def test_exec_sed_task_error_handling(self):
                 kisao_id='KISAO_0000528',
                 changes=[sedml_data_model.AlgorithmParameterChange(kisao_id='KISAO_0000531', new_value='not a number')]
             ))
-        with mock.patch.dict('os.environ', {'ALGORITHM_SUBSTITUTION_POLICY': 'SAME_METHOD'}):
+        with mock.patch.dict('os.environ', {'ALGORITHM_SUBSTITUTION_POLICY': 'NONE'}):
             with self.assertRaisesRegex(CombineArchiveExecutionError, 'not a valid value'):
                 core.exec_sedml_docs_in_combine_archive(archive_filename, self.dirname)
 
@@ -245,7 +245,7 @@ def test_exec_sed_task_error_handling(self):
                 kisao_id='KISAO_0000528',
                 changes=[sedml_data_model.AlgorithmParameterChange(kisao_id='KISAO_9999999', new_value='not a number')]
             ))
-        with mock.patch.dict('os.environ', {'ALGORITHM_SUBSTITUTION_POLICY': 'SAME_METHOD'}):
+        with mock.patch.dict('os.environ', {'ALGORITHM_SUBSTITUTION_POLICY': 'NONE'}):
             with self.assertRaisesRegex(CombineArchiveExecutionError, 'does not support parameter'):
                 core.exec_sedml_docs_in_combine_archive(archive_filename, self.dirname)