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Neural decoder example#11

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ncguilbeault wants to merge 34 commits intomainbonsai-rx/machinelearning-examples:mainfrom decoder-model-examplebonsai-rx/machinelearning-examples:decoder-model-exampleCopy head branch name to clipboard

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Commits on Nov 4, 2024

• Added bonsai environment

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  4ef34c9

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• Added decoder python library

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• Added workflow with extensions

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Commits on Nov 5, 2024

• Added README

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• Added clusterless spike decoder model

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• Changed name to sorted spikes

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• Added clusterless spikes bonsai workflow

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• Updated data iterator to handle outputting position bins

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Commits on Nov 6, 2024

• Changed name of core to decoder

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• Added likelihood module

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• Updated model loader to use decoder module

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• Updated init file

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Commits on Nov 7, 2024

• Add bonsai shaders package

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• Updated to use shaders render frequency for timing

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• Renamed folders more appropriately to NeuralDecoding/PositionDecodingFromHippocampus

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• Updated to remove cuda path declaration and copy of decoder class

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• Updated to have filename declarations at top

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• Updated

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Commits on Nov 8, 2024

• Added README to example

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• Added requirements.txt file

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• Updated notebook for 50Hz down sampling

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Commits on Nov 14, 2024

• Added cell for plotting

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• Added online FPS estimate

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• Updated to properly use 50 Hz

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Commits on Nov 15, 2024

• Remove exensions and use new Bonsai.ML.NeuralDecoding package

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Commits on Nov 18, 2024

• Updated to use Bonsai.ML package

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• Removed requirements.txt file in favor of installing from git repo

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• Updated notebooks for new package

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• Added new dataset to README

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  82b92bd

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• Updated example README

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• Removed python package from inside example folder

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Commits on Nov 19, 2024

• Renamed workflows

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  ee9def4

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• Updated notebooks and removed redundant loading from file

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• Updated package version correctly

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