Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Adding online learning to lds model #10

Merged
merged 4 commits into from
May 22, 2024
Merged

Adding online learning to lds model #10

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
a9561e9
Updated main.py script for running synchronous and asynchronous optim…
ncguilbeault May 7, 2024
dd9cb05
Added workflows for optimization
ncguilbeault May 7, 2024
1126706
Added a distinct until changed node to optimization workflow
ncguilbeault May 10, 2024
dd65d3a
Merge branch 'main-upstream' into lds-learning-upstream
ncguilbeault May 22, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
124 changes: 124 additions & 0 deletions src/Bonsai.ML.LinearDynamicalSystems/Learning/CheckOptimizationFinished.bonsai
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,124 @@
<?xml version="1.0" encoding="utf-8"?>
<WorkflowBuilder Version="2.8.1"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns:py="clr-namespace:Bonsai.Scripting.Python;assembly=Bonsai.Scripting.Python"
xmlns:p1="clr-namespace:Bonsai.ML.LinearDynamicalSystems;assembly=Bonsai.ML.LinearDynamicalSystems"
xmlns:rx="clr-namespace:Bonsai.Reactive;assembly=Bonsai.Core"
xmlns:scr="clr-namespace:Bonsai.Scripting.Expressions;assembly=Bonsai.Scripting.Expressions"
xmlns="https://bonsai-rx.org/2018/workflow">
<Workflow>
<Nodes>
<Expression xsi:type="WorkflowInput">
<Name>Source1</Name>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="py:ObserveOnGIL" />
</Expression>
<Expression xsi:type="ExternalizedMapping">
<Property Name="Name" DisplayName="Name" Category="ModelReference" />
</Expression>
<Expression xsi:type="SubscribeSubject" TypeArguments="p1:ModelReference">
<Name>model</Name>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>Name</Selector>
</Expression>
<Expression xsi:type="Format">
<Format>{0}.get_optimization_finished()</Format>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:WithLatestFrom" />
</Expression>
<Expression xsi:type="InputMapping">
<PropertyMappings>
<Property Name="Expression" Selector="it.Item2" />
</PropertyMappings>
</Expression>
<Expression xsi:type="SubscribeSubject">
<Name>LDSModule</Name>
</Expression>
<Expression xsi:type="PropertyMapping">
<PropertyMappings>
<Property Name="Module" />
</PropertyMappings>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="py:Eval">
<py:Expression>model1.get_optimization_finished()</py:Expression>
</Combinator>
</Expression>
<Expression xsi:type="rx:Condition">
<Name>OptimizationFinished?</Name>
<Workflow>
<Nodes>
<Expression xsi:type="WorkflowInput">
<Name>Source1</Name>
</Expression>
<Expression xsi:type="scr:ExpressionTransform">
<scr:Expression>it.ToString() == "True"</scr:Expression>
</Expression>
<Expression xsi:type="WorkflowOutput" />
</Nodes>
<Edges>
<Edge From="0" To="1" Label="Source1" />
<Edge From="1" To="2" Label="Source1" />
</Edges>
</Workflow>
</Expression>
<Expression xsi:type="SubscribeSubject" TypeArguments="p1:ModelReference">
<Name>model</Name>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>Name</Selector>
</Expression>
<Expression xsi:type="Format">
<Format>{0}.reset_optimization_loop()</Format>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:WithLatestFrom" />
</Expression>
<Expression xsi:type="InputMapping">
<PropertyMappings>
<Property Name="Expression" Selector="it.Item2" />
</PropertyMappings>
</Expression>
<Expression xsi:type="SubscribeSubject">
<Name>LDSModule</Name>
</Expression>
<Expression xsi:type="PropertyMapping">
<PropertyMappings>
<Property Name="Module" />
</PropertyMappings>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="py:Eval">
<py:Expression>model1.reset_optimization_loop()</py:Expression>
</Combinator>
</Expression>
<Expression xsi:type="WorkflowOutput" />
</Nodes>
<Edges>
<Edge From="0" To="1" Label="Source1" />
<Edge From="1" To="6" Label="Source1" />
<Edge From="2" To="3" Label="Source1" />
<Edge From="2" To="12" Label="Source1" />
<Edge From="3" To="4" Label="Source1" />
<Edge From="4" To="5" Label="Source1" />
<Edge From="5" To="6" Label="Source2" />
<Edge From="6" To="7" Label="Source1" />
<Edge From="7" To="10" Label="Source1" />
<Edge From="8" To="9" Label="Source1" />
<Edge From="9" To="10" Label="Source2" />
<Edge From="10" To="11" Label="Source1" />
<Edge From="11" To="15" Label="Source1" />
<Edge From="12" To="13" Label="Source1" />
<Edge From="13" To="14" Label="Source1" />
<Edge From="14" To="15" Label="Source2" />
<Edge From="15" To="16" Label="Source1" />
<Edge From="16" To="19" Label="Source1" />
<Edge From="17" To="18" Label="Source1" />
<Edge From="18" To="19" Label="Source2" />
<Edge From="19" To="20" Label="Source1" />
</Edges>
</Workflow>
</WorkflowBuilder>
210 changes: 210 additions & 0 deletions src/Bonsai.ML.LinearDynamicalSystems/Learning/RunOptimizationAsync.bonsai
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,210 @@
<?xml version="1.0" encoding="utf-8"?>
<WorkflowBuilder Version="2.8.1"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns:rx="clr-namespace:Bonsai.Reactive;assembly=Bonsai.Core"
xmlns:py="clr-namespace:Bonsai.Scripting.Python;assembly=Bonsai.Scripting.Python"
xmlns:p1="clr-namespace:Bonsai.ML.LinearDynamicalSystems;assembly=Bonsai.ML.LinearDynamicalSystems"
xmlns:scr="clr-namespace:Bonsai.Scripting.Expressions;assembly=Bonsai.Scripting.Expressions"
xmlns="https://bonsai-rx.org/2018/workflow">
<Workflow>
<Nodes>
<Expression xsi:type="WorkflowInput">
<Name>Source1</Name>
</Expression>
<Expression xsi:type="ExternalizedMapping">
<Property Name="Value" DisplayName="BatchSize" Category="TrainingData" />
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="IntProperty">
<Value>200</Value>
</Combinator>
</Expression>
<Expression xsi:type="PropertyMapping">
<PropertyMappings>
<Property Name="Count" />
</PropertyMappings>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="IntProperty">
<Value>200</Value>
</Combinator>
</Expression>
<Expression xsi:type="PropertyMapping">
<PropertyMappings>
<Property Name="Skip" />
</PropertyMappings>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:BufferCount">
<rx:Count>200</rx:Count>
<rx:Skip>200</rx:Skip>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:Concat" />
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="py:ObserveOnGIL" />
</Expression>
<Expression xsi:type="ExternalizedMapping">
<Property Name="Name" DisplayName="Name" Category="ModelReference" />
</Expression>
<Expression xsi:type="SubscribeSubject" TypeArguments="p1:ModelReference">
<Name>model</Name>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>Name</Selector>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:WithLatestFrom" />
</Expression>
<Expression xsi:type="ExternalizedMapping">
<Property Name="Value" DisplayName="sigma_a" Category="ParametersToOptimize" />
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="BooleanProperty">
<Value>true</Value>
</Combinator>
</Expression>
<Expression xsi:type="ExternalizedMapping">
<Property Name="Value" DisplayName="sigma_x, sigma_y" Category="ParametersToOptimize" />
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="BooleanProperty">
<Value>true</Value>
</Combinator>
</Expression>
<Expression xsi:type="ExternalizedMapping">
<Property Name="Value" DisplayName="m0" Category="ParametersToOptimize" />
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="BooleanProperty">
<Value>true</Value>
</Combinator>
</Expression>
<Expression xsi:type="ExternalizedMapping">
<Property Name="Value" DisplayName="sqrt_diag_V0_value" Category="ParametersToOptimize" />
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="BooleanProperty">
<Value>true</Value>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="IntProperty">
<Value>200</Value>
</Combinator>
</Expression>
<Expression xsi:type="ExternalizedMapping">
<Property Name="Value" DisplayName="NumIterations" Category="Hyperparameters" />
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="IntProperty">
<Value>50</Value>
</Combinator>
</Expression>
<Expression xsi:type="ExternalizedMapping">
<Property Name="Value" DisplayName="PrintConvergenceMessages" Category="Verbosity" />
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="BooleanProperty">
<Value>true</Value>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:CombineLatest" />
</Expression>
<Expression xsi:type="Format">
<Format>vars_to_estimate = {{"sigma_a": {0}, "sqrt_diag_R": {1}, "R": {1}, "m0": {2}, "sqrt_diag_V0": {3}, "V0": {3}}}, batch_size = {4}, max_iter = {5}, disp = {6}</Format>
<Selector>it.Item1, it.Item2, it.Item3, it.Item4, it.Item5, it.Item6, it.Item7</Selector>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:WithLatestFrom" />
</Expression>
<Expression xsi:type="Format">
<Format>{0}.run_optimization_async({1}, {2})</Format>
<Selector>it.Item1.Item2,it.Item1.Item1, it.Item2</Selector>
</Expression>
<Expression xsi:type="InputMapping">
<PropertyMappings>
<Property Name="Expression" Selector="it" />
</PropertyMappings>
</Expression>
<Expression xsi:type="SubscribeSubject">
<Name>LDSModule</Name>
</Expression>
<Expression xsi:type="PropertyMapping">
<PropertyMappings>
<Property Name="Module" />
</PropertyMappings>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="py:Eval">
<py:Expression>model1.run_optimization_async(x=372.270477294922,y=149.264526367188, vars_to_estimate = {"sigma_a": True, "sqrt_diag_R": True, "R": True, "m0": True, "sqrt_diag_V0": True, "V0": True}, batch_size = 200)</py:Expression>
</Combinator>
</Expression>
<Expression xsi:type="scr:ExpressionTransform">
<scr:Expression>it.ToString() == "True"</scr:Expression>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:DistinctUntilChanged" />
</Expression>
<Expression xsi:type="rx:Condition">
<Name>IsRunningOptimization?</Name>
<Workflow>
<Nodes>
<Expression xsi:type="WorkflowInput">
<Name>Source1</Name>
</Expression>
<Expression xsi:type="WorkflowOutput" />
</Nodes>
<Edges>
<Edge From="0" To="1" Label="Source1" />
</Edges>
</Workflow>
</Expression>
<Expression xsi:type="WorkflowOutput" />
</Nodes>
<Edges>
<Edge From="0" To="6" Label="Source1" />
<Edge From="1" To="2" Label="Source1" />
<Edge From="1" To="4" Label="Source1" />
<Edge From="1" To="21" Label="Source1" />
<Edge From="2" To="3" Label="Source1" />
<Edge From="3" To="6" Label="Source2" />
<Edge From="4" To="5" Label="Source1" />
<Edge From="5" To="6" Label="Source3" />
<Edge From="6" To="7" Label="Source1" />
<Edge From="7" To="8" Label="Source1" />
<Edge From="8" To="12" Label="Source1" />
<Edge From="9" To="10" Label="Source1" />
<Edge From="10" To="11" Label="Source1" />
<Edge From="11" To="12" Label="Source2" />
<Edge From="12" To="28" Label="Source1" />
<Edge From="13" To="14" Label="Source1" />
<Edge From="14" To="26" Label="Source1" />
<Edge From="15" To="16" Label="Source1" />
<Edge From="16" To="26" Label="Source2" />
<Edge From="17" To="18" Label="Source1" />
<Edge From="18" To="26" Label="Source3" />
<Edge From="19" To="20" Label="Source1" />
<Edge From="20" To="26" Label="Source4" />
<Edge From="21" To="26" Label="Source5" />
<Edge From="22" To="23" Label="Source1" />
<Edge From="23" To="26" Label="Source6" />
<Edge From="24" To="25" Label="Source1" />
<Edge From="25" To="26" Label="Source7" />
<Edge From="26" To="27" Label="Source1" />
<Edge From="27" To="28" Label="Source2" />
<Edge From="28" To="29" Label="Source1" />
<Edge From="29" To="30" Label="Source1" />
<Edge From="30" To="33" Label="Source1" />
<Edge From="31" To="32" Label="Source1" />
<Edge From="32" To="33" Label="Source2" />
<Edge From="33" To="34" Label="Source1" />
<Edge From="34" To="35" Label="Source1" />
<Edge From="35" To="36" Label="Source1" />
<Edge From="36" To="37" Label="Source1" />
</Edges>
</Workflow>
</WorkflowBuilder>
Loading