-
Notifications
You must be signed in to change notification settings - Fork 5
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Add functionality to HMM package to load and save HMMs from pickle files #36
base: main
Are you sure you want to change the base?
Conversation
Directory.Build.props
Outdated
<VersionPrefix>0.3.1</VersionPrefix> | ||
<VersionSuffix></VersionSuffix> | ||
<VersionPrefix>0.3.2</VersionPrefix> | ||
<VersionSuffix>preview-241031</VersionSuffix> |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
<VersionSuffix>preview-241031</VersionSuffix> | |
<VersionSuffix></VersionSuffix> |
I would maybe keep these preview strings internal unless we publish them on nuget? There are other ways to generate prerelease strings automatically which we have developed for the main bonsai repo which we can discuss incorporating here if necessary.
</Expression> | ||
<Expression xsi:type="Combinator"> | ||
<Combinator xsi:type="py:Exec"> | ||
<py:Script>hmm=HiddenMarkovModel(num_states=14, dimensions=2, observation_type="gaussian", init_state_distribution=[-18.4206626312063, -18.4206809139513, -1.60158960596107E-07, -18.4206809139513, -18.4206809139513, -18.4206809077833, -18.4206809139513, -18.4206809139513, -18.4206809139513, -18.4206809139512, -18.4206809139513, -18.4206809139513, -18.4206809139513, -18.4206809139513, -18.4206809139513, -18.4206809139513, -18.4049264491465], transition_matrix=[[-0.0917453060101488, -81.2027391869505, -81.2024595933819, -81.1937739522692, -81.2027400688462, -2.87807199972272, -81.2024665218064, -81.2027400688462, -81.2027400688462, -69.7226036942302, -81.0262420410483, -81.2027400688462, -81.2027400688462, -81.2027400688462, -72.3853538894001, -81.2027400686459, -3.46032916644607], [-79.3509060625393, -0.238318392160603, -79.3509060627742, -3.59028488542753, -79.3406966323115, -79.3509060343066, -2.07482406652899, -79.3509049453246, -71.8712269840478, -79.1042606674896, -64.7841761999145, -79.3509060627742, -79.3509060627736, -4.91052913823847, -79.3501000762402, -2.96596669611815, -79.3509060627742], [-6.56494712317959, -80.2574114399651, -0.026045953329265, -80.257411439958, -80.2574114399651, -80.2530342501165, -80.2574114399645, -80.2574114399651, -80.2574114399651, -80.2574114383822, -80.257411439963, -80.2574114399651, -80.2574114399651, -80.2574114399651, -80.2574111255061, -80.2574114399651, -3.71724663052794], [-79.7429093428404, -2.53565795122399, -79.7429229020156, -0.224476567256381, -79.5630094990036, -79.7427375380492, -19.7913509211774, -79.7429070271501, -79.7429229020155, -2.4282565377201, -21.6260812291176, -79.7429229020156, -79.7429229020155, -79.7429186717266, -79.5090809839381, -3.39127701396958, -79.7429229020155], [-78.8818948027961, -78.7832645463526, -78.8818948027961, -78.8499675310739, -0.121636510293837, -78.8818948027961, -78.8818779633122, -3.58627108739195, -78.4075671859456, -42.3643447224343, -78.8818948020075, -4.51454403425192, -78.7231231874378, -78.87538610611, -78.8818948027961, -2.57860476672775, -78.8818948027961], [-2.7555263648427, -81.0801260570515, -81.0801929012697, -80.8956240194587, -81.0801928008559, -0.138839571009248, -81.0735688412014, -81.0801929022382, -81.0801929022382, -7.82562008352599, -8.61673274109047, -81.0801929022382, -81.0801929022382, -81.0801929022365, -2.72606578281343, -81.0801915285753, -81.0781516310129], [-79.5041067991954, -4.1599732418435, -79.5041087741123, -2.68539625218839, -79.5041061909036, -79.5040779393979, -0.134619177577566, -79.5041087741123, -79.5041087741123, -73.6956564343321, -3.22954046210177, -79.5041087741123, -79.5041087741123, -79.4233470364088, -5.96249967131849, -79.4986866951327, -79.5041087741123], [-77.6194474368312, -77.6193823080006, -77.6194474368312, -77.619444418796, -77.6081779744754, -77.6194474368312, -77.6194468907703, -0.103028273335152, -77.6190640785059, -77.6194036382625, -77.6194474368306, -77.5387276499137, -2.3238237214254, -77.6193398550474, -77.6194474368312, -77.6189244782998, -77.6194474368312], [-79.1272032685144, -79.1271836355738, -79.1272032685144, -79.1272032685144, -4.66185628154607, -79.1272032685144, -79.1272032685137, -79.1271923677142, -0.0773138048193137, -79.1272032685144, -79.1272032685144, -4.01038951846901, -79.1225247474742, -4.13699455343842, -79.1272032685144, -3.47846842197873, -79.1272032685144], [-79.7969561517743, -79.765068795109, -79.7990815280627, -4.09625383296592, -75.3723004292721, -79.7911688467326, -79.720196927761, -79.7990800333231, -79.7990815280627, -0.133182168954187, -2.25632214661011, -79.7990815280627, -79.7990815280627, -79.7990814068833, -79.561391245246, -5.70642909748951, -79.799081522695], [-80.4624207711008, -80.4542080911501, -80.4674009479227, -2.94217521646244, -80.4642331700328, -80.4245500525541, -4.96905052833919, -80.4674009479227, -80.4674009479227, -4.80319039045672, -0.17771751882944, -80.4674009479227, -80.4674009479227, -80.4674008912272, -2.35475258982744, -80.3817582244586, -80.4674009478945], [-78.6981767986761, -78.6981767986758, -78.6981767986761, -78.6981767986761, -7.12957810042029, -78.6981767986761, -78.6981767986761, -78.6963612933677, -2.80129905358812, -78.6981767986761, -78.6981767986761, -0.0852294830554562, -3.90374244629814, -78.6981474734794, -78.6981767986761, -78.6869101761337, -78.6981767986761], [-78.3498622799896, -78.3498622799895, -78.3498622799896, -78.3498622799896, -4.01387798881909, -78.3498622799896, -78.3498622799895, -78.3452810994854, -78.2643761749177, -78.3498622799896, -78.3498622799896, -2.85311264769245, -0.0787486209906157, -78.3498612775223, -78.3498622799896, -78.3492719452334, -78.3498622799896], [-79.3538024195476, -3.13614011174884, -79.3538024195476, -79.3530894101277, -79.35193649913, -79.3538024195476, -79.33901250438, -79.3538024052913, -4.27770214689655, -79.3537999739468, -79.3538024152413, -79.3537476832867, -79.3538001630013, -0.0590336585215668, -79.3538024194494, -15.1403292390908, -79.3538024195476], [-80.8141761499455, -80.8299171351327, -80.8321243984454, -79.1140751828713, -80.7513948366163, -2.46917174255065, -59.1530651603166, -80.8321243984454, -80.8321243984454, -45.6935849036213, -2.7323847350908, -80.8321243984454, -80.8321243984454, -80.832124389641, -0.16311012032014, -7.15177346756846, -80.8321242340716], [-79.4246034910015, -3.48334852232484, -79.4246034910015, -5.7737892503062, -2.93766284446338, -79.4246034909991, -79.336913429818, -79.4164695681632, -4.34565213609343, -3.36034672586263, -79.4246014668271, -79.4244070303921, -79.4246022597813, -3.36103501832537, -79.4246034902494, -0.18535102870502, -79.4246034910015], [-3.13408601573862, -80.8656106188802, -4.3248839327091, -80.8654855265545, -80.8656106208069, -80.1649555362992, -80.8655973607584, -80.8656106208069, -80.8656106208069, -80.8382022891591, -80.8655171006304, -80.8656106208069, -80.8656106208069, -80.8656106208069, -80.8555535140235, -80.8656106208068, -0.0584500177614161]], observation_means=[[2.05933262307724, 10.8204332645415], [68.7980115395418, 149.313879689245], [0.0113367588749664, 0.0808845676209286], [36.8854430152106, 135.261998572096], [97.9835708320062, 475.786905396804], [4.85126962230773, 23.6361472322517], [44.6355192653933, 49.5566309333179], [266.329727183569, 710.965268736304], [173.521982388192, 173.718928476886], [17.616028067975, 196.233369659563], [17.0875828299435, 70.9425248823598], [204.737788814457, 189.798442944057], [260.143513242843, 262.732194667054], [122.001566709437, 101.435491122701], [9.67037560981843, 42.5625437060252], [96.2721341933364, 273.356625327438], [0.605044362615348, 3.14081365313523]], observation_covs=[[[0.905758344483852, 0], [1.2373681195321, 4.4831763035586]], [[14.3996184698293, 0], [10.9077146872554, 38.9063669683094]], [[0.015436036882364, 0], [0.109020732271086, 0.0444526519767825]], [[8.62408922415511, 0], [23.396230710446, 33.1375162351934]], [[65.0846425847929, 0], [-28.8024157037375, 67.0423181141901]], [[1.82643624659801, 0], [-1.17971110603607, 9.14393736242647]], [[10.9198108801625, 0], [3.33008442316356, 22.7612245320485]], [[51.3305896755247, 0], [13.743041597268, 189.84256808673]], [[12.5414378446675, 0], [-15.4565754923402, 78.6949525926226]], [[8.58696987374004, 0], [9.38430390783284, 66.0305935687787]], [[6.0341314486845, 0], [-9.64384045715633, 21.4295441508927]], [[9.1823933029414, 0], [13.3851117087156, 57.213049685513]], [[28.9288965124962, 0], [31.0513047915833, 60.3716689888219]], [[18.062239316743, 0], [11.8053467734538, 44.8280733649598]], [[3.79541470022462, 0], [-7.87657635998183, 13.537109427599]], [[28.3235630671307, 0], [-20.844035765898, 49.090267281817]], [[0.435879792544103, 0], [1.50536883080018, 1.53287076550159]]])</py:Script> |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Are these numbers specific fixed initialization parameters, or the result of previews runs which were saved here?
429b589
to
6ce9de0
Compare
Summary
This PR adds functionality to the Bonsai.ML.HiddenMarkovModels package to enable HMMs to be saved to and loaded from pickle files on disk.
Changes