seqr hail search dev release #166
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: seqr hail search dev release | |
| on: | |
| workflow_run: | |
| workflows: ["Hail Search Unit Tests"] | |
| types: | |
| - completed | |
| branches: | |
| - dev | |
| permissions: | |
| id-token: write | |
| jobs: | |
| docker: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event.workflow_run.conclusion == 'success' }} | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.event.workflow_run.head_branch }} | |
| - name: authenticate to google cloud | |
| id: "auth" | |
| uses: google-github-actions/auth@v0 | |
| with: | |
| workload_identity_provider: "${{ secrets.WORKLOAD_IDENTITY_PROVIDER }}" | |
| service_account: "${{ secrets.RUN_SA_EMAIL }}" | |
| - name: "setup gcloud sdk" | |
| uses: google-github-actions/setup-gcloud@v0 | |
| - name: Build and push images | |
| run: |- | |
| gcloud builds submit --quiet --substitutions="COMMIT_SHA=${{ github.event.workflow_run.head_sha }},_CUSTOM_BRANCH_TAG=gcloud-dev" --config .cloudbuild/seqr-hail-search-docker.cloudbuild.yaml --gcs-log-dir=gs://seqr-github-actions-logs/logs . | |
| helm_update: | |
| runs-on: ubuntu-latest | |
| needs: docker | |
| steps: | |
| - name: Retrieve tgg-helm repo for broad seqr chart | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: broadinstitute/tgg-helm | |
| token: ${{ secrets.SEQR_VERSION_UPDATE_TOKEN }} | |
| ref: main | |
| persist-credentials: false | |
| fetch-depth: 0 | |
| - name: update image tag in the dev broad seqr chart | |
| uses: mikefarah/yq@v4.22.1 | |
| with: | |
| cmd: > | |
| yq -i '.seqr-platform.hail-search.image.tag = "${{ github.event.workflow_run.head_sha }}"' charts/dev-broad-seqr/values.yaml | |
| - name: Commit and Push changes | |
| uses: Andro999b/push@v1.3 | |
| with: | |
| repository: broadinstitute/tgg-helm | |
| branch: main | |
| github_token: ${{ secrets.SEQR_VERSION_UPDATE_TOKEN }} | |
| author_email: ${{ github.actor }}@users.noreply.github.com | |
| author_name: tgg-automation | |
| message: "Update hail-search dev release docker tag to ${{ github.event.workflow_run.head_sha }}" |