Merge pull request #4478 from broadinstitute/removeduplicate-mito-con…

…straint remove mito highConstraintRegion
broadinstitute · Nov 12, 2024 · 60f720e · 60f720e
2 parents e2293f3 + faa48b7
commit 60f720e
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Showing 3 changed files with 0 additions and 12 deletions.
diff --git a/hail_search/queries/mito.py b/hail_search/queries/mito.py
@@ -71,9 +71,6 @@ class MitoHailTableQuery(BaseHailTableQuery):
     CORE_FIELDS = BaseHailTableQuery.CORE_FIELDS + ['rsid']
     MITO_ANNOTATION_FIELDS = {
         'commonLowHeteroplasmy': lambda r: r.common_low_heteroplasmy,
-        'highConstraintRegion': (
-            lambda r: r.high_constraint_region if hasattr(r, 'high_constraint_region') else r.high_constraint_region_mito
-        ),
         'mitomapPathogenic': lambda r: r.mitomap.pathogenic,
     }
     BASE_ANNOTATION_FIELDS = {

diff --git a/hail_search/test_utils.py b/hail_search/test_utils.py
@@ -915,7 +915,6 @@
         'mlc': 3.38874,
     },
     'commonLowHeteroplasmy': False,
-    'highConstraintRegion': True,
     'mitomapPathogenic': None,
     'clinvar': {
         'alleleId': 677748,
@@ -969,7 +968,6 @@
         'mlc': None,
     },
     'commonLowHeteroplasmy': False,
-    'highConstraintRegion': True,
     'mitomapPathogenic': None,
     'clinvar': None,
     'transcripts': {
@@ -1016,7 +1014,6 @@
         'mlc': 0.7514,
     },
     'commonLowHeteroplasmy': True,
-    'highConstraintRegion': False,
     'mitomapPathogenic': True,
     'clinvar': {
         'alleleId': 150280,

diff --git a/ui/shared/components/panel/variants/Annotations.jsx b/ui/shared/components/panel/variants/Annotations.jsx
@@ -638,12 +638,6 @@ const Annotations = React.memo(({ variant, mainGeneId, showMainGene, transcripts
           />
         </span>
       )}
-      {variant.highConstraintRegion && (
-        <span>
-          <HorizontalSpacer width={12} />
-          <Label color="red" horizontal size="tiny">High Constraint Region</Label>
-        </span>
-      )}
       {nonMajorConsequences.length > 0 && (
         <div>
           <b>Additonal VEP consequences: &nbsp;</b>