Update workflow.

.github/workflows/main.yml

@@ -4,40 +4,50 @@ name: main
 concurrency:
   group: ${{ github.head_ref || github.run_id }}
   cancel-in-progress: true
-# yamllint disable-line rule:truthy
+# yamllint disable rule:line-length
 on:
   push:
     branches: [main]
   pull_request:
-    branches: ['*']
+    branches: ["*"]
 jobs:
   run-tests:
     name: Run tests for ${{ matrix.os }} on ${{ matrix.python-version }}
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
       matrix:
-        # Currently only developing on windows.
-        os: [windows-latest]
         # os: [ubuntu-latest, macos-latest, windows-latest]
-        python-version: ['3.12']
+        os: [windows-latest]
+        python-version: ["3.12"]
     steps:
-      - uses: actions/checkout@v3
-      - name: create build environment
-        uses: mamba-org/provision-with-micromamba@main
+      - uses: actions/checkout@v4
+      - name: Install TinyTex
+        uses: r-lib/actions/setup-tinytex@v2
+      - name: Install additional LaTeX packages
+        run: |
+          tlmgr update --self
+          tlmgr install a4wide beamer biber biblatex caption eurosym grfext minibox moreverb ntgclass relsize setspace xfrac
+          tlmgr list --only-installed
+      - name: Install conda environment with micromamba
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: environment.yml
-          environment-name: gha-testing
-          cache-env: true
-          extra-specs: |
-            python=${{ matrix.python-version }}
-      - name: run pytest
+          create-args: python=${{ matrix.python-version }}
+          cache-environment: true
+          micromamba-version: 1.5.6-0
+      - name: Run full test suite on MacOS and Linux
+        shell: bash -l {0}
+        run: |
+          micromamba activate thesis
+          pytest -v --cov=./ --cov-report=xml
+        if: runner.os != 'Windows'
+      - name: Run test suite on Windows
         shell: bash -l {0}
         run: |
-          micromamba activate gha-testing
-          pytest --cov-report=xml --cov=./
-      - name: Upload coverage report.
-        if: runner.os == 'Linux' && matrix.python-version == '3.12'
+          micromamba activate thesis
+          pytest -v --cov=./ --cov-report=xml
+        if: runner.os == 'Windows'
+      - name: Upload coverage reports
+        if: runner.os == 'Windows' && matrix.python-version == '3.12'
         uses: codecov/codecov-action@v3
-        # with:
-        #   token: ${{ secrets.CODECOV_TOKEN }}

environment.yml

@@ -25,15 +25,6 @@ dependencies:
   - pandas >=2.2
   - plotly >=5.2.0,<6
 
-  # R template project dependencies
-  # Currently we are not using R hence we do not need to install these dependencies.
-  # - pytask-r >=0.4.1
-  # - pyreadr
-  # - r-plyr
-  # - r-precommit
-  # - r-yaml
-  # - r-forcats
-
   # Install project
   - pip:
     - -e .