Update environment and change to Python 3.12.

.github/workflows/main.yml

@@ -17,8 +17,10 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-latest, macos-latest, windows-latest]
-        python-version: ['3.11']
+        # Currently only developing on windows.
+        os: [windows-latest]
+        # os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: ['3.12']
     steps:
       - uses: actions/checkout@v3
       - name: create build environment
@@ -35,7 +37,7 @@ jobs:
           micromamba activate gha-testing
           pytest --cov-report=xml --cov=./
       - name: Upload coverage report.
-        if: runner.os == 'Linux' && matrix.python-version == '3.11'
+        if: runner.os == 'Linux' && matrix.python-version == '3.12'
         uses: codecov/codecov-action@v3
         # with:
         #   token: ${{ secrets.CODECOV_TOKEN }}

.pre-commit-config.yaml

@@ -38,7 +38,7 @@ repos:
     rev: 23.9.1
     hooks:
       - id: black
-        language_version: python3.11
+        language_version: python3.12
   - repo: https://github.com/asottile/blacken-docs
     rev: 1.16.0
     hooks:

environment.yml

@@ -1,24 +1,38 @@
 ---
 name: thesis
-channels: [conda-forge, nodefaults]
+channels: [conda-forge, r, nodefaults]
 dependencies:
+  - python ==3.12
+  - pip >=21.1
+
+  # Development dependencies
   - conda-lock
   - ipykernel
   - jupyterlab
-  - pandas
-  - pip >=21.1
-  - plotly>=5.13.0
   - pre-commit
-  - pytask-latex>=0.4.0
-  - pytask-parallel>=0.4.0
-  - pytask>=0.4.0
+
+  # Language agnostic template project dependencies
+  - pytask >=0.5.0
+  - pytask-latex >=0.4.2
+  - pytask-parallel >=0.5.0
   - pytest
   - pytest-cov
   - pytest-xdist
-  - python-graphviz
-  - python=3.11
-  - pyyaml
-  - setuptools_scm
+
+  # Python template project dependencies
   - statsmodels
-  - toml
-  - pip: [-e ., kaleido==0.1.0.post1, pdbp, joblib]
+  - numpy
+  - pandas >=2.2
+  - plotly >=5.2.0,<6
+
+  # R template project dependencies
+  # Currently we are not using R hence we do not need to install these dependencies.
+  # - pytask-r >=0.4.1
+  # - pyreadr
+  # - r-plyr
+  # - r-precommit
+  # - r-yaml
+  # - r-forcats
+
+  # Install project
+  - pip: [-e ., pdbp, kaleido==0.1.0.post1, joblib]

setup.cfg

@@ -26,7 +26,7 @@ project_urls =
 packages = find:
 install_requires =
     pytask
-python_requires = >=3.11
+python_requires = >=3.12
 include_package_data = True
 package_dir =
     =src