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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 134 48

Repositories

Showing 10 of 105 repositories
  • covvfit Public

    Fitness estimates of SARS-CoV-2 variants

    cbg-ethz/covvfit’s past year of commit activity
    Python 0 MIT 0 5 2 Updated Jan 25, 2025
  • vpipe-biohack24-frontend Public

    Cloudification of V-Pipe: Frontend for the Biohackathon 2024

    cbg-ethz/vpipe-biohack24-frontend’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 24, 2025
  • V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    cbg-ethz/V-pipe’s past year of commit activity
    Jupyter Notebook 134 Apache-2.0 48 33 (4 issues need help) 6 Updated Jan 24, 2025
  • FiTree Public
    cbg-ethz/FiTree’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 24, 2025
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    cbg-ethz/sr2silo’s past year of commit activity
    Python 1 MIT 0 10 (1 issue needs help) 2 Updated Jan 24, 2025
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin’s past year of commit activity
    Shell 7 3 1 3 Updated Jan 23, 2025
  • CTC-SCITE Public

    Computational method and analyses to study the clonality of circulating tumor cell clusters

    cbg-ethz/CTC-SCITE’s past year of commit activity
    C++ 2 GPL-3.0 1 3 0 Updated Jan 22, 2025
  • bmi Public

    Mutual information estimators and benchmark

    cbg-ethz/bmi’s past year of commit activity
    Python 39 MIT 6 9 2 Updated Jan 18, 2025
  • LongSom Public

    LongSom tool for long-reads

    cbg-ethz/LongSom’s past year of commit activity
    Python 7 0 2 0 Updated Jan 13, 2025
  • VILOCA Public

    VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data

    cbg-ethz/VILOCA’s past year of commit activity
    Python 14 GPL-3.0 0 2 0 Updated Jan 13, 2025
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