Patch transient CI failures due to busy file system #825
Workflow file for this run
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| name: CI for CMake | |
| on: | |
| push: | |
| paths: | |
| - "**/CMakeLists.txt" | |
| - "**.cmake" | |
| - "**.cmake.in" | |
| - "**.c" | |
| - "**.h" | |
| - "**.h.in" | |
| - ".github/workflows/ci_cmake.yml" | |
| pull_request: | |
| release: | |
| types: [published] | |
| env: | |
| CTEST_NO_TESTS_ACTION: "error" | |
| CMAKE_BUILD_PARALLEL_LEVEL: 4 | |
| CTEST_PARALLEL_LEVEL: 0 | |
| CMAKE_INSTALL_PREFIX: ~/local | |
| CMAKE_PREFIX_PATH: ~/local | |
| # Due to busy file system problems on the CI runners, we introduced a patch to | |
| # sleep if the MPI count of an I/O operation is unexpectedly 0 and then retry | |
| # the I/O operation once. The time is in milliseconds. | |
| SC_IO_SLEEP_TIME: 500 | |
| jobs: | |
| ubuntu-24: | |
| runs-on: ubuntu-24.04 | |
| name: Linux mpi=${{ matrix.mpi }} CC=${{ matrix.cc }} shared=${{ matrix.shared }} | |
| timeout-minutes: 60 | |
| strategy: | |
| matrix: | |
| cc: [gcc, clang] | |
| shared: [false] | |
| mpi: [true, false] | |
| # we only include one "shared=true" as it's less common usage | |
| # but we want to be sure CMake is OK with it | |
| include: | |
| - cc: gcc | |
| shared: true | |
| mpi: true | |
| env: | |
| CC: ${{ matrix.cc }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| name: Checkout source code | |
| - name: Patch I/O for CI by sleeping if I/O intensity is too high | |
| run: git apply doc/patch/patch-CI-IO.patch | |
| - name: Install system dependencies | |
| if: ${{ matrix.mpi }} | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install --no-install-recommends \ | |
| libmpich-dev mpich | |
| - name: CMake composite steps (build, test, install, examples) | |
| uses: ./.github/workflows/composite-cmake | |
| ubuntu-22: | |
| runs-on: ubuntu-22.04 | |
| name: Linux mpi=${{ matrix.mpi }} CC=${{ matrix.cc }} shared=${{ matrix.shared }} | |
| timeout-minutes: 60 | |
| strategy: | |
| matrix: | |
| cc: [gcc] | |
| shared: [false] | |
| mpi: [true] | |
| env: | |
| CC: ${{ matrix.cc }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| name: Checkout source code | |
| - name: Patch I/O for CI by sleeping if I/O intensity is too high | |
| run: git apply doc/patch/patch-CI-IO.patch | |
| - name: Install system dependencies | |
| if: ${{ matrix.mpi }} | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install --no-install-recommends \ | |
| libmpich-dev mpich | |
| - name: CMake composite steps (build, test, install, examples) | |
| uses: ./.github/workflows/composite-cmake | |
| linux-valgrind: | |
| needs: ubuntu-24 | |
| runs-on: ubuntu-24.04 | |
| name: Valgrind Linux mpi=${{ matrix.mpi }} CC=${{ matrix.cc }} | |
| timeout-minutes: 60 | |
| strategy: | |
| matrix: | |
| cc: [gcc] | |
| mpi: [true] | |
| valgrind: [ON] | |
| env: | |
| CC: ${{ matrix.cc }} | |
| steps: | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update -yq | |
| sudo apt-get install -yq --no-install-recommends \ | |
| libmpich-dev mpich valgrind | |
| - name: Checkout source code | |
| uses: actions/checkout@v4 | |
| - name: Patch I/O for CI by sleeping if I/O intensity is too high | |
| run: git apply doc/patch/patch-CI-IO.patch | |
| - name: Set macro for I/O waiting | |
| shell: bash | |
| # use an enviroment variable to prepend the flag to the bulit-in compiler flags | |
| run: echo "CFLAGS=-DSC_HACK_MPI_SLEEP=$SC_IO_SLEEP_TIME" >> "$GITHUB_ENV" | |
| - name: CMake configure | |
| run: cmake --preset default -DSC_ENABLE_MPI:BOOL=${{ matrix.mpi }} -DSC_TEST_WITH_VALGRIND:BOOL=${{ matrix.valgrind }} | |
| - name: CMake build | |
| run: cmake --build --preset default | |
| - name: CMake Test | |
| run: ctest --preset default | |
| - name: Upload log files | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: linux_cmake_valgrind_log | |
| path: | | |
| ./build/CMakeFiles/CMakeConfigureLog.yaml | |
| ./build/Testing/Temporary/LastTest.log | |
| mac: | |
| runs-on: macos-14 | |
| name: macOS mpi=${{ matrix.mpi }} CC=${{ matrix.cc }} shared=${{ matrix.shared }} | |
| timeout-minutes: 60 | |
| strategy: | |
| matrix: | |
| cc: [clang] | |
| # gcc-13 is broken in general for macOS GItHub Actions, but works fine on real computers. | |
| mpi: [true] | |
| shared: [false] | |
| # shared=true is not common usage, but let's test one case of it | |
| include: | |
| - shared: true | |
| cc: clang | |
| env: | |
| HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
| CC: ${{ matrix.cc }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| name: Checkout source code | |
| - name: Patch I/O for CI by sleeping if I/O intensity is too high | |
| run: git apply doc/patch/patch-CI-IO.patch | |
| - name: Install system dependencies | |
| run: brew install open-mpi | |
| - name: CMake composite steps (build, test, install, examples) | |
| uses: ./.github/workflows/composite-cmake | |
| windows: | |
| runs-on: windows-latest | |
| name: Windows | |
| timeout-minutes: 60 | |
| strategy: | |
| matrix: | |
| shared: [false] | |
| # GitHub Action Windows shared libs is generally broken, even with MSYS2, but works on real laptops etc. | |
| env: | |
| CMAKE_GENERATOR: "MinGW Makefiles" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| name: Checkout source code | |
| - name: Patch I/O for CI by sleeping if I/O intensity is too high | |
| run: git apply doc/patch/patch-CI-IO.patch | |
| - run: echo "CMAKE_INSTALL_PREFIX=$HOME/local" | Out-File -FilePath $env:GITHUB_ENV -Encoding utf8 -Append | |
| - run: echo "CMAKE_PREFIX_PATH=$HOME/local" | Out-File -FilePath $env:GITHUB_ENV -Encoding utf8 -Append | |
| - name: CMake configure without MPI | |
| run: cmake --preset default -DSC_ENABLE_MPI:BOOL=no -DSC_BUILD_SHARED_LIBS:BOOL=${{ matrix.shared }} | |
| - name: CMake build | |
| run: cmake --build --preset default --parallel | |
| - name: CMake Test | |
| run: ctest --preset default | |
| - name: CMake install (for examples) | |
| run: cmake --install build | |
| - name: CMake configure examples without MPI | |
| run: cmake -B example/build -S example | |
| - name: CMake build examples | |
| run: cmake --build example/build --parallel | |
| - name: Create package | |
| if: github.event.action == 'published' | |
| run: cpack --config build/CPackConfig.cmake | |
| - name: Upload package | |
| if: github.event.action == 'published' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: windows-binary-archive | |
| path: build/package | |
| - name: Upload log files | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: windows_cmake_log | |
| path: | | |
| ./build/CMakeFiles/CMakeConfigureLog.yaml | |
| ./build/Testing/Temporary/LastTest.log |