Merge pull request #143 from Public-Health-Bioinformatics/CanCoGen-vo…

…cabulary-fix CanCoGen field tweak
cidgoh · Feb 17, 2021 · 1ef3682 · 1ef3682
2 parents fb1b525 + 81113b7
commit 1ef3682
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Showing 4 changed files with 5 additions and 34 deletions.
diff --git a/script/main.js b/script/main.js
@@ -11,7 +11,7 @@
  * main.html?template=test_template
  *
  */
-const VERSION = '0.13.13';
+const VERSION = '0.13.14';
 const TEMPLATES = {
   'CanCOGeN Covid-19': {'folder': 'canada_covid19', 'status': 'published'},
   'PHAC Dexa (ALPHA)': {'folder': 'phac_dexa', 'status': 'draft'},

diff --git a/template/canada_covid19/data.js b/template/canada_covid19/data.js
@@ -3275,6 +3275,9 @@ var DATA = [
             "Illumina iSeq": {
               "Illumina iSeq 100": {}
             },
+            "Illumina NovaSeq": {
+              "Illumina NovaSeq 6000": {}
+            },
             "Illumina MiniSeq": {},
             "Illumina MiSeq": {},
             "Illumina NextSeq": {},
@@ -4072,24 +4075,5 @@ var DATA = [
         }
       }
     ]
-  },
-  {
-    "fieldName": "Illumina NovaSeq",
-    "children": [
-      {
-        "fieldName": "Illumina NovaSeq 6000",
-        "capitalize": "",
-        "ontology_id": "OBI_0002630",
-        "datatype": "",
-        "source": "",
-        "dataStatus": null,
-        "xs:minInclusive": "",
-        "xs:maxInclusive": "",
-        "requirement": "",
-        "description": "",
-        "guidance": "",
-        "examples": ""
-      }
-    ]
   }
 ]
diff --git a/template/canada_covid19/data.tsv b/template/canada_covid19/data.tsv
@@ -1025,7 +1025,7 @@ OBI_0002048	Illumina	      Illumina HiSeq 3000														illumina hiseq 3000
 OBI_0002049	Illumina	      Illumina HiSeq 4000														illumina hiseq 4000	A DNA sequencer manufactured by Illumina corporation, with two flow cell and a throughput of more than 400 Gb per day.	http://www.illumina.com/systems/hiseq-3000-4000.html	HiSeq 4000	DNA sequencer	OBI_0400103																	
 	Illumina	   Illumina iSeq																																				
 http://www.ebi.ac.uk/efo/EFO_0008635	Illumina iSeq	   Illumina iSeq 100														illumina iseq 100	The Illumina iSeq 100 is a benchtop sequencing machine developed by Illumina. Its primary applications include small whole-genome sequencing, targeted sequencing of a set of genes or gene regions, gene expression analysis and 16S metagenomic sequencing.	https://www.ebi.ac.uk/ols/ontologies/efo/terms?iri=http%3A%2F%2Fwww.ebi.ac.uk%2Fefo%2FEFO_0008635&viewMode=All&siblings=true	iSeq 100	high throughput sequencer	http://www.ebi.ac.uk/efo/EFO_0002699																	
-		   Illumina NovaSeq																																				
+	Illumina	   Illumina NovaSeq																																				
 OBI_0002630	Illumina NovaSeq	   Illumina NovaSeq 6000														illumina novaseq 6000	A DNA sequencer which is manufactured by the Illumina corporation, with two flow cells and an output of up to 6000 Gb (32-40 B reads per run)	http://www.illumina.com/systems/sequencing-platforms/novaseq.html	NovaSeq 6000	DNA sequencer	OBI_0400103																	
 http://www.ebi.ac.uk/efo/EFO_0008636	Illumina	   Illumina MiniSeq														illumina miniseq	The Illumina MiniSeq is a benchtop sequencing machine developed by Illumina and an output upto 8Gb.	https://www.illumina.com/systems/sequencing-platforms/miniseq/specifications.html	MiniSeq	high throughput sequencer	http://www.ebi.ac.uk/efo/EFO_0002699																	
 OBI_0002003	Illumina	   Illumina MiSeq														MiSeq	A DNA sequencer which is manufactured by the Illumina corporation. Built upon sequencing by synthesis technology, the machine provides an end-to-end solution (cluster generation, amplification, sequencing, and data analysis) in a single machine.	http://res.illumina.com/documents/products/datasheets/datasheet_miseq.pdf	illumina miseq	DNA sequencer	OBI_0400103																	

diff --git a/template/canada_covid19/reference.html b/template/canada_covid19/reference.html
@@ -1153,19 +1153,6 @@ <h2>CanCOGeN Guidelines for Covid19 Biosample metadata collection and submission
 							<td>None</td>
 						</tr>
 
-
-						<tr class="section">
-							<td colspan="5"><h3>Illumina NovaSeq</h3></td>
-						</tr>
-
-						<tr>
-							<td class="label">Illumina NovaSeq 6000</td>
-							<td></td>
-							<td></td>
-							<td></td>
-							<td>None</td>
-						</tr>
-
 						</table>
 
 		</tbody>