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new n/a value (#64)
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Damion Dooley authored Jun 16, 2020
1 parent ee67f71 commit 35ccff4
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Showing 3 changed files with 10 additions and 6 deletions.
8 changes: 6 additions & 2 deletions data.js
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Expand Up @@ -1072,7 +1072,9 @@ const DATA = [
"capitalize": "",
"ontology_id": "",
"datatype": "xs:nonNegativeInteger",
"dataStatus": null,
"dataStatus": [
"Not Applicable"
],
"xs:minInclusive": "",
"xs:maxInclusive": "",
"requirement": "recommended",
Expand All @@ -1086,7 +1088,9 @@ const DATA = [
"capitalize": "",
"ontology_id": "",
"datatype": "xs:token",
"dataStatus": null,
"dataStatus": [
"Not Applicable"
],
"xs:minInclusive": "",
"xs:maxInclusive": "",
"requirement": "recommended",
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4 changes: 2 additions & 2 deletions data.tsv
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Expand Up @@ -35,8 +35,8 @@ ID SC %
Sample collection and processing collection protocol xs:token The name and version of a particular protocol used for sampling. Free text. BCRonaSamplingProtocol v. 1.2
Sample collection and processing specimen processing multiple Not Applicable; Missing; Not Collected; Not Provided; Restricted Access recommended Any processing applied to the sample during or after receiving the sample. Critical for interpreting data. Select all the applicable processes from the pick list. If virus was passaged, include information in "lab host", "passage number", and "passage method" fields. If none of the processes in the pick list apply, put "not applicable". Virus passage
Sample collection and processing lab host select Not Applicable; Missing; Not Collected; Not Provided; Restricted Access recommended Name and description of the laboratory host used to propagate the source organism or material from which the sample was obtained. Type of cell line used for propagation. Provide the name of the cell line using the picklist in the template. If not passaged, put "not applicable". Vero E6 cell line Passage details/history
Sample collection and processing passage number xs:nonNegativeInteger recommended Number of passages. Provide number of known passages. If not passaged, put "not applicable" 3 Passage details/history
Sample collection and processing passage method xs:token recommended Description of how organism was passaged. Free text. Provide a very short description (<10 words). If not passaged, put "not applicable". Passage details/history
Sample collection and processing passage number xs:nonNegativeInteger Not Applicable recommended Number of passages. Provide number of known passages. If not passaged, put "not applicable" 3 Passage details/history
Sample collection and processing passage method xs:token Not Applicable recommended Description of how organism was passaged. Free text. Provide a very short description (<10 words). If not passaged, put "not applicable". Passage details/history
Sample collection and processing biomaterial extracted select Not Applicable; Missing; Not Collected; Not Provided; Restricted Access The biomaterial extracted from samples for the purpose of sequencing. Provide the biomaterial extracted from the picklist in the template. RNA (total)
Host Information
Host Information host (common name) select Not Applicable; Missing; Not Collected; Not Provided; Restricted Access The commonly used name of the host. Common name or scientific name are required if there was a host. Both can be provided, if known. Use terms from the pick lists in the template. Common name e.g. human, bat. If the sample was environmental, put "not applicable. Human
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4 changes: 2 additions & 2 deletions reference.html
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Expand Up @@ -340,7 +340,7 @@ <h2>CanCOGeN Guidelines for Covid19 Biosample metadata collection and submission
<td>Number of passages.</td>
<td>Provide number of known passages. If not passaged, put "not applicable"</td>
<td>3</td>
<td>None</td>
<td>['Not Applicable']</td>
</tr>


Expand All @@ -349,7 +349,7 @@ <h2>CanCOGeN Guidelines for Covid19 Biosample metadata collection and submission
<td>Description of how organism was passaged.</td>
<td>Free text. Provide a very short description (<10 words). If not passaged, put "not applicable".</td>
<td></td>
<td>None</td>
<td>['Not Applicable']</td>
</tr>


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